FMO11660.5prime Sequence
584 bp (584 high quality bases) assembled on 2012-05-29
> FMO11660.5prime
CAGTCGACATGTTAAACAGCGCTAATAACAATTCTCCCCAGCACCCGGTG
AGTGCACCATCCGATATCAACATGAATGGCTATAACCGAAAATTGCCACA
AAAACGTGGCTATGAGATGCCAAAATACTCTGATCCAAAAAAGAAAATGT
GCAAGGAGCGCATTCCCCAGCCGAAGAACACGGTGGCCATGCTGAATGAG
CTAAGACATGGACTGATTTACAAATTGGAGTCACAGACTGGTCCGGTACA
CGCACCTCTATTCACGATATCCGTGGAGGTCGATGGACAGAAATACTTGG
GCCAGGGCCGTAGTAAAAAAGTTGCACGCATCGAAGCAGCAGCAACTGCA
CTGCGCAGCTTTATACAGTTTAAGGATGGAGCAGTTCTGTCGCCTCTGAA
GCCGGCGGGCAACTTGGACTTTACCAGCGATGAACATCTTGAATATGGTA
TTGAAAATTTGTCCAGTTCAAAAATGTTTGAGATCATTCAGACGATGTTG
ACTGAAAAGCTATCCAACCCTACCTCGCTTGAACAACCCACGTTTTGCAT
GAGTCAGAGCAAGTATGCAAGCTTTCTAGACCAT
FMO11660.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Adar-RC | 3451 | CG12598-RC | 502..1060 | 8..566 | 2780 | 99.8 | Plus |
| Adar-RN | 6823 | CG12598-RN | 502..1052 | 8..558 | 2740 | 99.8 | Plus |
| Adar-RD | 2042 | CG12598-RD | 502..1052 | 8..558 | 2740 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1779088..1779377 | 277..566 | 1435 | 99.7 | Plus |
| X | 23542271 | X | 1778814..1778962 | 132..280 | 745 | 100 | Plus |
| X | 23542271 | X | 1778612..1778699 | 45..132 | 440 | 100 | Plus |
| X | 23542271 | X | 1775702..1775738 | 8..44 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:55:52 has no hits.
FMO11660.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:33 Download gff for
FMO11660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adar-RC | 471..1035 | 1..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:41 Download gff for
FMO11660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adar-RC | 496..1060 | 1..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:56 Download gff for
FMO11660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adar-RC | 496..1060 | 1..566 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:56 Download gff for
FMO11660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1778612..1778699 | 45..132 | 100 | -> | Plus |
| X | 1778815..1778960 | 133..278 | 100 | -> | Plus |
| X | 1779090..1779377 | 279..566 | 99 | | Plus |
| X | 1775696..1775738 | 1..44 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:41 Download gff for
FMO11660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1669729..1669771 | 1..44 | 93 | -> | Plus |
| arm_X | 1672645..1672732 | 45..132 | 100 | -> | Plus |
| arm_X | 1672848..1672993 | 133..278 | 100 | -> | Plus |
| arm_X | 1673123..1673410 | 279..566 | 99 | | Plus |
