FMO11668.5prime Sequence
1087 bp (1019 high quality bases) assembled on 2012-05-29
> FMO11668.5prime
CAGTCGACATGTTCGGACACTTTAAGCTCGTCTATCCGGCTCCTATATCG
GAGCCCATACAGTCTAGGGATTCGAATGCATACATGATGGAGACGCTGCG
AAATTCGGGCTTGAATTTGAAGAACGATTTCGGTATAGGCCGCAAGATTT
GGAGGGTGTTTTCGTTCACCTACAATATGGTGATACTTCCCGTAAGTTTC
CCAATCAACTATGTGATACATCTGGCGGAGTTCCCGCCGGAGCTGCTGCT
GCAATCCCTGCAACTGTGCCTCAACACTTGGTGCTTCGCTCTGAAGTTCT
TCACTCTGATCGTCTATACGCACCGCTTGGAGCTGGCCAACAAGCACTTT
GACGAATTGGATAAGTACTGCGTGAAGCCGGCGGAGAAGCGCAAGGTTCG
CGACATGGTGGCCACTATTACAAGACTGTACCTGACCTTCGTTGTGGTCT
ACGTCCTCTACGCCACCTCCACGCTACTGGACGGACTACTGCACCACCGT
GTTCCCTACAATACGTACTATCCGTTCATAAACTGGCGAGTCGATCGGAC
CCAGATGTACATCCAGAGTTTTCTGGAGTACTTCACCGTGGGTTATGCCA
TATATGTGGCCACCGCCACCGATTCCTACCCTGTGATTTACGTGGCAGCC
CTGCGAACTCATATTCTCTTGCTCAAGGACCGTATCATTTACTTGGGCGA
TCCCAGCAACGAGGGTAGCAGCGACCCGAGCTACATGTTTAAATCGTTGG
TGGATTGTATCAAGGCACACAGAACCATGCTAAATTTTTGTGATGCCCAT
TCAACCAATCATCTCTGGCACGATATTTGCCCAATTCATCATATGCGGAT
CGATCCTGGGCATAATTATGATCAACATGGTTTTGTTCGCTGATAATCGA
CCCGATTCGGCATAGTCATCTACGTTATGGCCGTCCTTCTGCAGACTTTT
CCGCTTTGCTTCTACTGCAACGCATCGTGACGACTGCAAAGACTGGGCCA
ACGACCTTTTCCATTCCGCCTGGGGGGTGCAGGACAAGGCGATACCAGCC
GACTTGTTCATCCAGTTTCTGGAAGAACTCTGCAACA
FMO11668.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Or43b-RA | 1412 | CG17853-RA | 62..1123 | 9..1071 | 4990 | 98.4 | Plus |
| Cul1-RB | 3886 | CG1877-RB | 3494..3779 | 1071..785 | 1125 | 94.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7921768..7922543 | 784..9 | 3865 | 99.9 | Minus |
| 2R | 25286936 | 2R | 7921202..7921472 | 1054..785 | 980 | 94.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:59:07 has no hits.
FMO11668.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:11 Download gff for
FMO11668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or43b-RA | 62..1128 | 9..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:45 Download gff for
FMO11668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or43b-RA | 62..1128 | 9..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:34 Download gff for
FMO11668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or43b-RA | 62..1128 | 9..1077 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:34 Download gff for
FMO11668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7921194..7921472 | 785..1065 | 94 | <- | Minus |
| 2R | 7921768..7922543 | 9..784 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:45 Download gff for
FMO11668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3808699..3808977 | 785..1065 | 94 | <- | Minus |
| arm_2R | 3809273..3810048 | 9..784 | 99 | | Minus |
