FMO11669.5prime Sequence
461 bp (461 high quality bases) assembled on 2012-05-29
> FMO11669.5prime
CAGTCGACATGACCATCTTTAACCTGTACATATTCGACAAGTTCGGAACA
CTGCTCCACTACGCAGAATGGAATCGCACCAAGAAATCGGGCATCACACG
CGAGGAAGAAGCCAAACTCACCTACGGAATGCTCTTCTCCATAAAGTCCT
TCGTCAGTAAGATATCGCCACACGATCCCAAGGAGGGCTTCCTTTACTAC
AAGACCAATCGCTACGCCCTGCATTATCTGGAAACTCCCTCTGGATTAAA
GTTCGTTCTCAACACGGACACGACGGCCATCAATGTGAAGGAGCTGCTAC
AGCAGTTGTACGCCAAGGTGTGGGTAGAGTTCGTCGTGCGAGATCCACTG
TGGACACCCGGCACGGTGGTCACCTCGGAGCTGTTCCAGTCCAAGCTCGA
TGAGTTCGTCAGGCAGTCACCCATCTTCGGCATTCGCAATATAGTAAGCT
TTCTAGACCAT
FMO11669.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bet5-RA | 1051 | CG1359-RA | 125..559 | 9..443 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30180802..30180994 | 251..443 | 965 | 100 | Plus |
| 3R | 32079331 | 3R | 30180509..30180653 | 108..252 | 725 | 100 | Plus |
| 3R | 32079331 | 3R | 30180356..30180455 | 9..108 | 500 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:56:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5 | 4856 | G5 G5_DM 4856bp | 2826..2855 | 165..194 | 105 | 83.3 | Plus |
FMO11669.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:40 Download gff for
FMO11669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bet5-RA | 68..512 | 1..447 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:02 Download gff for
FMO11669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bet5-RA | 118..562 | 1..447 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:09 Download gff for
FMO11669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bet5-RA | 118..562 | 1..447 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:09 Download gff for
FMO11669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30180349..30180454 | 1..107 | 96 | -> | Plus |
| 3R | 30180509..30180651 | 108..250 | 100 | -> | Plus |
| 3R | 30180802..30180997 | 251..447 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:02 Download gff for
FMO11669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26006071..26006176 | 1..107 | 96 | -> | Plus |
| arm_3R | 26006231..26006373 | 108..250 | 100 | -> | Plus |
| arm_3R | 26006524..26006719 | 251..447 | 99 | | Plus |
