Clone FMO11675 Report

Search the DGRC for FMO11675

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:116
Well:75
Vector:pMK33-CFH-BD
Associated Gene/TranscriptSfp84E-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11675.5prime Sequence

506 bp (506 high quality bases) assembled on 2012-05-29

> FMO11675.5prime
CAGTCGACATGCGTCACTTTACCGTGCTAGTATCCTGCATCCTGATAGTT
ATATTGCCATGCGTGTTAGGGGCTCACAGGACAGCTCTCAAGAGTCATTA
TAGAAGCTTTGTGAAACCAAAGCAGAATGTCATACGGGCTAGAACCAATC
AAACAACACAACTTACATTAGGAGACTATACGGAAAACTTTTATAAACAC
TGCATGGATATTTTCAAAGAGAAAAACTTGGTTGGTAAAGTGATCCATGG
CATGATCAGTGGAATTTTAGACAGGCTCAATGAAGTGTGCCTCGACAAGC
CCATTCACCCACTTATCCACAAAGTTTTCACGGAAATCCTTCTCTGTGGC
GGAAGCATGTCGGATGCAATCGATAGCGTCATTGACATATTATTTGGAAA
TTTGGAAAGAAATTGCAGGGAGAGGCCTGGATTCAATAGCTATTATATTT
TAACCAGTGCGGAAAACGAAATAGTTGAATCAAAAGGTGCAAGCTTTCTA
GACCAT

FMO11675.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp84E-RA 685 CG42484-RA 30..509 9..488 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7979764..7980241 488..11 2390 100 Minus
Blast to na_te.dros performed 2014-11-28 02:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1b 5171 Rt1b RT1B 5150bp 3972..4068 65..161 125 58.8 Plus

FMO11675.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:12 Download gff for FMO11675.5prime
Subject Subject Range Query Range Percent Splice Strand
Sfp84E-RA 30..512 9..492 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:46 Download gff for FMO11675.5prime
Subject Subject Range Query Range Percent Splice Strand
Sfp84E-RA 30..512 9..492 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:36 Download gff for FMO11675.5prime
Subject Subject Range Query Range Percent Splice Strand
Sfp84E-RA 30..512 9..492 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:36 Download gff for FMO11675.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7979760..7980241 11..492 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:46 Download gff for FMO11675.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3805482..3805963 11..492 99   Minus