FMO11676.5prime Sequence
997 bp (983 high quality bases) assembled on 2012-05-29
> FMO11676.5prime
CAGTCGACATGGACATCGATTTGAGTCTGGACGAGATTATAGAGCGGAAG
CGCGGGCAACGCGGCTATCGTCCCCTCGACAGAAAGTTCAATGCGAACTT
CTCCAAGCCGCGCCAGCTGCTGAACAAGCCTTTTTTCAAGCCATCGGGTG
CCCGAGGATCTCACTCTGATACGCCGGCAAAGCGCACCTTCGATGCCAGA
AACACGATCGCCGCGAAGACACGGGCCAAGATAGCCGATGCCCGGGATCT
GATCAACAAGAGCGTGCGCGACTCGGGCATCGATGCCCGCCAGCTGTTGC
TGGAGCGAAAGAAGGCCCGTTCGGCGGGCCCAATACTTATTGATGACGAA
GAAGAGTCGTTTGAGCCATCACATCGCGCACGCGGAAAGGGAGTGCACAT
CGGTCAGTTTGGTCACCGCCTTAGCATGTCAAACCATGCGTTTGGCACCA
TTCAGGCGAAATGGGACTCGGACGACGGGGTCGTTGAACTGGGTAACCAC
ATGTTGTCCGGCTTGCGTCGAACCTTTGACCCCAGATCCCATAAGCCGGG
CAAACCCTTTGCTCCACGACGCTATATTGATCTTGATAATATGCAGGACC
TCGAGGATGAGGAAATATCTCGCACACTGCACTTAGGGCAAATGAAGCAA
GCGTCGCCACGCTACTCAATTGGTGGGCTCGACCTGAACCGCGGCGACGA
CGTGGAGATGTCCATGGCCCCACTAAATAACAAAATAGATAACATGCATT
TCTCCATTTACGAGGCGGCCCGCAATCGCATTGAGCGTCCTTCGCTGACC
AACCGACTCGTAGTTGGACGCTCAATACCACCAAGGAGCCTTCTCGAGCG
CCGCCACCGCGACACAGCAAGCACAAGTAAACTCCCAGAATCGCTGCGGT
CTCGTCTGTTTGTCGGTAGAGGGATCTTCACATTTCTCATGGCATCTACG
CAACGAGAACCGGAAAAAGCTGTTGGTGGCGGTGGTGCTAGGATAGC
FMO11676.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18259-RA | 2055 | CG18259-RA | 119..1112 | 8..997 | 4705 | 98.7 | Plus |
| CG6961-RA | 1894 | CG6961-RA | 150..1143 | 8..997 | 4570 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18782713..18783233 | 609..89 | 2560 | 99.4 | Minus |
| X | 23542271 | X | 18787398..18787918 | 609..89 | 2485 | 98.5 | Minus |
| X | 23542271 | X | 18782270..18782656 | 992..609 | 1585 | 96.9 | Minus |
| X | 23542271 | X | 18786956..18787341 | 991..609 | 1520 | 95.9 | Minus |
| X | 23542271 | X | 18783296..18783376 | 88..8 | 405 | 100 | Minus |
| X | 23542271 | X | 18787981..18788061 | 88..8 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:59:14 has no hits.
FMO11676.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:13 Download gff for
FMO11676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18259-RA | 108..1109 | 1..997 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:49 Download gff for
FMO11676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18259-RA | 111..1112 | 1..997 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:38 Download gff for
FMO11676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18259-RA | 111..1112 | 1..997 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:38 Download gff for
FMO11676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18782264..18782655 | 610..997 | 97 | <- | Minus |
| X | 18782713..18783233 | 89..609 | 99 | <- | Minus |
| X | 18783296..18783379 | 1..88 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:49 Download gff for
FMO11676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18676297..18676688 | 610..997 | 97 | <- | Minus |
| arm_X | 18676746..18677266 | 89..609 | 99 | <- | Minus |
| arm_X | 18677329..18677412 | 1..88 | 95 | | Minus |
