FMO11679.5prime Sequence
927 bp (927 high quality bases) assembled on 2012-05-29
> FMO11679.5prime
CAGTCGACATGAAGGAAGGAAAATTGGAGCAGACGCGCAGTAAACTAGAG
CAAATACTTAATATCCATAAGCCAAATTATCTGGATAGTACTTTTCAAGA
GCTTCTTCCCAATTTTTGCAAAGGATTTCTATTCAGCGAAAAATGGGTTA
AGTGGATCAAAATTGTTTTGCTCGGAACTCTTATTTTATTGGGAGTTAAA
TACTACTATGAAGAAATGCAGGGAAAGAATTGCGCTCTATATCTGCCTCG
CAACTTGCGTTACGCTTTCCGACCGCCTGAAAATTGTAATTTCTGTGCAA
ATATTAAAAATGTGCCGCGACTTAAAAATATTAGCCCCCAGGAGTTTGAG
AAAAAATTCGCATACAGTGCAGCGCCAGTTATCATTAGTGATGCCACTAA
AAATTGGACAGCAGTTTCGTTATTTAACTACTGGTATTTTCGCGATGTTT
ATACCAAGGCCAAGCAAAAGCAGCACATAAGGGAATGCCAGTTCCTGCCG
TATAAAACCGGATTTTTGGATATCTATGACGCTTTGGATATGCCCGAGGA
TCGGGTGGAGCTAAAACCAGGCGAACAGCCCTGGTACTTCGGCTGGAGCA
ACTGCCATGCGGAAACCGCAGAGGAATTCCGCAGGCACTATGGTAGACCA
TATTTTCTGCCCGAAGGCTCGGAAAACAATGCTGTTGATTGGTTTTTCAT
TGGCTTATCCGGCTTGGGTGCCCAAATGCATATTGACAACGTGAGACTGC
CATCGTGGCAGGCTCAGCTGGCGGGCAGCAAGCGATGGCTACTGGTTCCA
CCTCCCGAGTGCTACCTGCAGTGCCGGAGATTCGACGTGGTGGTCAACAG
GGCGACATAATTTGTGTTGGAACGACAAGTGGTAACCACCAGACCTTTGT
GCGTCCGGAAGCATCAGCCTGACTATG
FMO11679.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14331-RC | 1143 | CG14331-RC | 25..941 | 9..923 | 4400 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17439836..17440148 | 731..419 | 1565 | 100 | Minus |
3R | 32079331 | 3R | 17440486..17440704 | 227..9 | 1095 | 100 | Minus |
3R | 32079331 | 3R | 17440208..17440401 | 419..226 | 970 | 100 | Minus |
3R | 32079331 | 3R | 17439296..17439430 | 860..727 | 610 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:59:21 has no hits.
FMO11679.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:14 Download gff for
FMO11679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14331-RC | 18..944 | 1..927 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:54 Download gff for
FMO11679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14331-RC | 18..944 | 1..927 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:43 Download gff for
FMO11679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14331-RC | 18..944 | 1..927 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:43 Download gff for
FMO11679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17439296..17439425 | 732..860 | 99 | <- | Minus |
3R | 17439836..17440147 | 420..731 | 100 | <- | Minus |
3R | 17440208..17440399 | 228..419 | 100 | <- | Minus |
3R | 17440486..17440708 | 1..227 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:54 Download gff for
FMO11679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13265558..13265869 | 420..731 | 100 | <- | Minus |
arm_3R | 13265930..13266121 | 228..419 | 100 | <- | Minus |
arm_3R | 13266208..13266430 | 1..227 | 98 | | Minus |
arm_3R | 13265018..13265147 | 732..860 | 99 | <- | Minus |