FMO11682.5prime Sequence
593 bp (593 high quality bases) assembled on 2012-05-29
> FMO11682.5prime
CAGTCGACATGGCCGATTTCCATGAACTTATTGTGACTTGCATTATTTTC
CTATACCAAATTATTTTGATTTTCCGATCAATCCACCCCTTCAGAAAAGA
CGCTATGCTGCTTATTTTGCACAACGTTCTGCTGTACTACGTGATCAATA
TGTTCAAGCATTTGGCCCAGGCATCGATTAACTCGGACGGACCGGTGAAC
ACATTCTACTACGTACCATTGGTGTATGAAGAAAACATTGCCTTGGGACG
CCATCAGAGTTGGCATGAGGTCCTTAGGACATCCAGCTGGCAATTCTTTG
AGGTCCTTTTCAGACATCATCTGGCCCTGCTGTTGCCATTTAATTTGGCT
CTCCTGGTGCCCCGCTGCAAGTTGGCCTTCATTAGCACACTGGTTCTCTT
GTCGAACTTTGTGCTGTTCGTCTGTTTCGCCTCGGCCATTTGTCAGCTGT
TGTGGGTCCATGGCCACGCCCACAGCCTGCGCCTCCTCACAATCATGTGT
TTGGGCCCCGTTTGCCAAGTGGTTCTGGTGTGCCGCCTCCTGGGCCGCGT
GTGGCTCAGTCAGTGGATTCTTGTTGCAAGCTTTCTAGACCAT
FMO11682.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15278-RA | 981 | CG15278-RA | 113..679 | 9..575 | 2835 | 100 | Plus |
| CG15278-RC | 1714 | CG15278-RC | 113..674 | 9..575 | 2750 | 99.1 | Plus |
| CG15278-RB | 995 | CG15278-RB | 113..659 | 9..555 | 2735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14875506..14875697 | 554..363 | 960 | 100 | Minus |
| 2L | 23513712 | 2L | 14875757..14875948 | 362..171 | 960 | 100 | Minus |
| 2L | 23513712 | 2L | 14876002..14876098 | 171..75 | 485 | 100 | Minus |
| 2L | 23513712 | 2L | 14876156..14876221 | 74..9 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:56:24 has no hits.
FMO11682.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:41 Download gff for
FMO11682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15278-RA | 8..588 | 1..581 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:05 Download gff for
FMO11682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15278-RA | 24..604 | 1..581 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:12 Download gff for
FMO11682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15278-RA | 105..685 | 1..581 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:12 Download gff for
FMO11682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14875506..14875697 | 363..554 | 100 | <- | Minus |
| 2L | 14875757..14875947 | 172..362 | 100 | <- | Minus |
| 2L | 14876002..14876098 | 75..171 | 100 | <- | Minus |
| 2L | 14876156..14876229 | 1..74 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:05 Download gff for
FMO11682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14875506..14875697 | 363..554 | 100 | <- | Minus |
| arm_2L | 14875757..14875947 | 172..362 | 100 | <- | Minus |
| arm_2L | 14876002..14876098 | 75..171 | 100 | <- | Minus |
| arm_2L | 14876156..14876229 | 1..74 | 94 | | Minus |
