FMO11688.5prime Sequence
922 bp (922 high quality bases) assembled on 2012-05-29
> FMO11688.5prime
CAGTCGACATGTTACTTATTAATATTGTAGTGCCAACAGAGCATCTCTTT
GTCCTCAGTATTCATAAGTGTGACATTCGTCCATTTGTGGTAGAGGGGAA
ACAAGTTGGTCTTATTAAGTCAGATGTTTTAAAACATCTCGAAAAGTATC
CTGAAGTATTTTGCATTCGTGCTTGTGAGCAAACTAAACAGGGTTTGGTA
GAGCTAAATCCTGCTTTTCGTGACTATAACGAGCGCACTGAGCAACTGGA
AAAGGTTTTGCGTAACTTGCGCTCCGAGGGACTTTTTCCTGCATTACAGG
GATGGAGAGATGAGTATTTCGAGGTAAAAGCAGACTGCAGAGCTCTACTT
AAAATGGAACGAGCTGCTACTCCGCTCTTTGGAGTGCGCAAGTACGGCGT
CGATATAAACGGTTACGTAAGACATCCGACGCTTGGACTATGCATTTGGC
TGCAGCAGCGGTCAAACACAAAAGAGACCTGGCCTGGAAAGTGGGACAAT
ATGGTAGGCGGTGGACTTTCAGTCGGCTTTGGTATTAAGGAAACAGCCAT
TAAGGAGGCTGCAGAGGAGGCATCAATTCCTTCTGACCTAGTCAAGAATT
TGGTGTCCGCAGGATGTGTCTCATTTTACTTTGAAAGCCGACAAGGACTT
TTTCCCAATACCGAATATGTTTTCGACTTAGAGCTACCACTTTGACTTTG
TGCCTCAAAACGCTGACGGGGAGGTCCAGGCCTTTGAGCTGCTAACAGCC
AGGACTGTGTGGAGCGCGTTTTTACTTCAGATTTCAAGACAACTTTCAGC
GCCTGTGGTGATTGATTTTCTTATCCGACCGGTCACATAACAGCAGATGA
TGTTGTCCGACTTCACACAAATCGTTGAGCTCTTGCACGTGCCCTTACAG
TCCATATATACGTACCAGACAC
FMO11688.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12567-RF | 1885 | CG12567-RF | 24..936 | 9..922 | 4440 | 99.3 | Plus |
| CG12567-RG | 1907 | CG12567-RG | 95..958 | 58..922 | 4195 | 99.3 | Plus |
| CG12567-RD | 1875 | CG12567-RD | 63..926 | 58..922 | 4195 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 23162212..23162876 | 852..188 | 3135 | 99.4 | Minus |
| 2L | 23513712 | 2L | 23323955..23324192 | 852..615 | 880 | 95 | Minus |
| 2L | 23513712 | 2L | 23415916..23416153 | 615..852 | 880 | 95 | Plus |
| 2L | 23513712 | 2L | 23162924..23163058 | 192..58 | 675 | 100 | Minus |
| 2L | 23513712 | 2L | 23162071..23162135 | 922..858 | 310 | 98.5 | Minus |
| 2L | 23513712 | 2L | 23174410..23174461 | 60..9 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:59:39 has no hits.
FMO11688.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:17 Download gff for
FMO11688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12567-RF | 24..936 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:06 Download gff for
FMO11688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12567-RF | 24..936 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:51 Download gff for
FMO11688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12567-RF | 24..936 | 9..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:51 Download gff for
FMO11688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 23162071..23162139 | 853..922 | 97 | <- | Minus |
| 2L | 23162212..23162872 | 192..852 | 99 | <- | Minus |
| 2L | 23162925..23163058 | 58..191 | 100 | <- | Minus |
| 2L | 23174413..23174461 | 9..57 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:06 Download gff for
FMO11688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2LHet | 20582..20650 | 853..922 | 97 | <- | Minus |
| 2LHet | 20723..21383 | 192..852 | 99 | <- | Minus |
| 2LHet | 21436..21569 | 58..191 | 100 | <- | Minus |
| 2LHet | 32924..32972 | 9..57 | 100 | | Minus |
