FMO11689.5prime Sequence
921 bp (920 high quality bases) assembled on 2012-05-29
> FMO11689.5prime
CAGTCGACATGGAGTCTTCCTGCAAATCCTGGCTGTTGTGCAGCATCCTG
GTGCTTGTGGCCTTTTCGTTGGTCAGTGCATCCGAAGATGAAGAGCGCTT
GGTGCGTGACCTCTTTCGAGGCTACAATAAACTCATACGACCCGTACAGA
ATATGACACAAAAAGTTGGAGTAAGATTTGGTTTGGCGTTCGTACAGCTA
ATCAATGTCAATGAGAAAAATCAAATTATGAAATCAAACGTTTGGTTACG
TTTGGTTTGGTACGACTACCAGCTGCAGTGGGATGAGGCCGACTACGGCG
GCATCGGGGTGTTGCGTCTGCCCCCCGACAAGGTTTGGAAGCCGGACATT
GTGCTCTTCAATAATGCCGATGGCAACTACGAGGTGCGCTACAAGTCCAA
CGTGCTGATTTATCCCACGGGAGAGGTCCTGTGGGTTCCTCCGGCCATTT
ACCAGAGCTCCTGCACCATCGATGTGACCTACTTCCCCTTCGATCAGCAG
ACCTGTATCATGAAGTTCGGATCGTGGACCTTCAATGGAGATCAGGTCTC
ATTGGCGCTCTATAATAATAAGAACTTTGTGGATCTGTCGGATTACTGGA
AGTCCGGCACCTGGGACATTATAGAGGTGCCCGCCTATCTGAACGTTTAC
GAGGGCGATAGCAACCACCCCACGGAGACTGACATCACATTCTACATCAT
CATCCGGCGAAAGACTCTCTTCTACACTGTGAATTTAATTCTGCCCACGG
TGCTGATTTCCTTCCTCTGCGTCTTGGTATTTTTACCTGCCAGCCGAGGC
CGGCGAAAAGGTTACGCTCGGATTAGCATTTTGCTGTCACTGGTTGTGTT
CATGTTGCTGGTGTCAAAAATTCTGCCCCAACCGTCGCTGGTGCTGCCAT
GATCCCCAATAATTTGCTGCT
FMO11689.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nAChRbeta1-RA | 2460 | CG11348-RA | 240..1152 | 8..919 | 4360 | 98.8 | Plus |
nAChRbeta1-RB | 818 | CG11348-RB | 240..304 | 8..72 | 325 | 100 | Plus |
nAChRalpha2-RB | 2319 | CG6844-RB | 967..1041 | 471..545 | 225 | 86.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4433615..4434061 | 365..812 | 2190 | 99.8 | Plus |
3L | 28110227 | 3L | 4433305..4433459 | 210..364 | 775 | 100 | Plus |
3L | 28110227 | 3L | 4432385..4432522 | 72..209 | 690 | 100 | Plus |
3L | 28110227 | 3L | 4434488..4434600 | 809..919 | 330 | 90.3 | Plus |
3L | 28110227 | 3L | 4429651..4429715 | 8..72 | 325 | 100 | Plus |
3R | 32079331 | 3R | 24487529..24487605 | 471..547 | 235 | 87 | Plus |
X | 23542271 | X | 8306670..8306749 | 520..441 | 190 | 82.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:59:42 has no hits.
FMO11689.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:18 Download gff for
FMO11689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAcRbeta-64B-RA | 219..1132 | 8..921 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:07 Download gff for
FMO11689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAcRbeta-64B-RA | 240..1153 | 8..921 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:53 Download gff for
FMO11689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAChRbeta1-RA | 240..1153 | 8..921 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:53 Download gff for
FMO11689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4429651..4429715 | 8..72 | 100 | -> | Plus |
3L | 4432386..4432522 | 73..209 | 100 | -> | Plus |
3L | 4433305..4433459 | 210..364 | 100 | -> | Plus |
3L | 4433615..4434059 | 365..810 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:07 Download gff for
FMO11689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4429651..4429715 | 8..72 | 100 | -> | Plus |
arm_3L | 4432386..4432522 | 73..209 | 100 | -> | Plus |
arm_3L | 4433305..4433459 | 210..364 | 100 | -> | Plus |
arm_3L | 4433615..4434059 | 365..810 | 99 | -> | Plus |