Clone FMO11696 Report

Search the DGRC for FMO11696

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:116
Well:96
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG4000-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11696.5prime Sequence

557 bp (557 high quality bases) assembled on 2012-05-29

> FMO11696.5prime
CAGTCGACATGCGTGCCACAGTGTTTTTTCTCGGCCTCTTGGCTATCAGT
TACTGGGAGGAGTCCCATGGTCATGTTGTGCCCGTGGGTCTTCCTGCAGT
CGGAACCTATCTGCTGTCTCCACCCGTTGTCTTGCTAGTCCAGCCACCTC
CTCCTCCGCCGGAAGACGATGGCTCCTACAAGCCGCCTTCGCCCCCCGAA
GATGGCTCGTGGCAGCCACAGCCTGGTCTGGAGGGAGAGTACTCGGACCC
GGAACTAAGCCAGAGTGGCAGTGGAAGCATTACAGCCAGTGACGCAGGAG
CTGCTGCCCTGAGTTTGGTTGCCTCACAATCTGTAGACGCCCAAGATGCC
CCTGCTCCGGCGGAGGCCGGTGGAGCAGGAGGTGCCGGACAAGCGGGACA
GGCTGGAGCACTTCTAGGCGGAGCGGGAGGAGCAGGTGGAGCTGGTGGTG
GAGGCAGCGCTGGAGGCGGTGGCGGCGGAGGAGGCGGCGGCGGTGGCGGG
ACGGCCACATCCGGCCAGAGCGGAGACAGTTGCCAGCCCCGGAGCGCCGA
GTCCAGC

FMO11696.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4000-RA 999 CG4000-RA 70..617 9..557 2690 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20676673..20677206 557..23 2595 99.4 Minus
Blast to na_te.dros performed on 2014-11-28 02:59:32 has no hits.

FMO11696.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:16 Download gff for FMO11696.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4000-RA 71..618 9..557 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:01 Download gff for FMO11696.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4000-RA 71..618 9..557 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:48 Download gff for FMO11696.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4000-RA 70..617 9..557 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:48 Download gff for FMO11696.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20676673..20677205 24..557 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:01 Download gff for FMO11696.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16502395..16502927 24..557 99 <- Minus