FMO11701.5prime Sequence
1000 bp (-60 high quality bases) assembled on 2012-05-16
> FMO11701.5prime
ACATAAGTATTCATAAGTGTGACATTCGTCCATTTGTGGTAGAGGGGAAA
CAAGTTGGTCTTATTAAGTCAGATGTTTTAAAACATCTCGAAAAGTATCC
TGAAGTATTTTGCATTCGTGCTTGTGAGCAAACTAAACAGGGTTTGGTAG
AGCTAAATCCTGCTTTTCGTGACTATAACGAGCGCACTGAGCAACTGGAA
AAGGTTTTGCGTAACTTGCGCTCCGAGGGACTTTTTCCTGCATTACAGGG
ATGGAGAGATGAGTATTTCGAGGTAAAAGCAGACTGCAGAGCTCTACTTA
AAATGGAACGAGCTGCTACTCCGCTCTTTGGAGTGCGCAAGTACGGCGTC
GATATAAACGGTTACGTAAGACATCCGACGCTTGGACTATGCATTTGGCT
GCAGCATCGGTCAAACACAAAAGAGACCTGGCCTGGAAAGTGGGACAATA
TGGTAGGCGGTGGACTTTCAGTCGGCTTTGGTATTAAGGAAACAGCCATT
AAGGAGGCTGCAGAGGAGGCATCAATTCCTTCTGACCTAGTCAAGAATTT
GGTGTCCGCAGGATGTGTCTCATTTTACTTTGAAAGCCGACAAGGACTTT
TTCCCAATACCGAATATGTTTTCGACTTATAGCTACCGCTTGACTTTTGT
GCCTCAAAACGCTGACGGGGAGGTCCAGGCCTTTGAGCTGCTAACAGCCA
AGGACTGTGTGGAGCGCGTTTTTTACTTCAGATTTTCAAGACAACTTCAG
CGCCTGTGGTGATTGATTTTCTTATCCGACACGGTCACATAACAGCAGAT
GATGTTGTCGACTTCACACAAATCGTTGAGCTCTTGCACGTGCCCTTACA
GTCCATATATACGTACAAGACCCGCTTTGAGCAATCCATAAAAACAACCT
CAATTCTTGCCAGGTGATTCCCAAAACTGTAACTGTGCATATTTCAGAAA
ATATCAATGCAGAATGCGCACAAGAAGGCGATGCAAGCTTTCTAGACCAT
FMO11701.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:46:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12567-RD | 1875 | CG12567-RD | 57..1034 | 1..981 | 4665 | 98.7 | Plus |
| CG12567-RF | 1885 | CG12567-RF | 72..1044 | 6..981 | 4655 | 98.8 | Plus |
| CG12567-RG | 1907 | CG12567-RG | 95..1066 | 7..981 | 4650 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:46:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 23162212..23162876 | 804..137 | 3145 | 99.1 | Minus |
| 2L | 23513712 | 2L | 23323955..23324192 | 804..564 | 905 | 94.6 | Minus |
| 2L | 23513712 | 2L | 23415916..23416153 | 564..804 | 905 | 94.6 | Plus |
| 2L | 23513712 | 2L | 23161963..23162140 | 981..804 | 735 | 96.6 | Minus |
| 2L | 23513712 | 2L | 23162924..23163058 | 141..7 | 675 | 100 | Minus |
| 2L | 23513712 | 2L | 23320513..23320637 | 981..857 | 395 | 91.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:46:24 has no hits.
FMO11701.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-16 10:41:00 Download gff for
FMO11701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12567-RD | 57..1039 | 1..986 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:27:04 Download gff for
FMO11701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12567-RD | 57..1039 | 1..986 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:25 Download gff for
FMO11701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12567-RD | 57..1039 | 1..986 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:25 Download gff for
FMO11701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 23161958..23162139 | 805..986 | 95 | <- | Minus |
| 2L | 23162212..23162872 | 141..804 | 99 | <- | Minus |
| 2L | 23162925..23163062 | 1..140 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:27:04 Download gff for
FMO11701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2LHet | 20469..20650 | 805..986 | 95 | <- | Minus |
| 2LHet | 20723..21383 | 141..804 | 99 | <- | Minus |
| 2LHet | 21436..21573 | 1..140 | 97 | | Minus |
