FMO11704.5prime Sequence
841 bp (841 high quality bases) assembled on 2012-05-29
> FMO11704.5prime
CAGTCGACATGTACATCACAACGGGCAAAACGTTTGCGGTGCTGAAAGGA
CCTTTACGTGATTGTTTTTTTCTTAGTAAGAGATGGCCAGCTGTTCAACA
ACTGCACTTAAGTGTCGCAATGGGAAATTATGTGAATGAAGCCTCAATTC
CCCTTCCAATCAATGTGGACTCTGCGGAAACAACTCGATTCTCCCCCCAG
CGCTCGCGTGACATTTCGTCTACAGTGATTAATGCACAAGCACCAATCTC
AAGCATTGATATCACAACTGACAACAGTTTTCATGCAGTCCTAAGCGATC
CAAATATTTGTCAAGATCCACATGTACAGTCCTATGATTGTTTCGGGTTG
ATCAGTCTTAATTCCGCGATGCAAAGCAATGTACCAACACCGTTTGGGGG
GCTTAACAAGTTTTCTCATCTGAACATGCCTGGCGGACAATGGTCCCAGG
AATTCAAGTTTACAGCGCAAAACATGCAGTGCTCTCACTACAGCGGTCTT
CGCGAAAGTTTGCGAGCGGATTGGGCGACTTACGATCAGAATGCTACTCT
TAAAACGAATGACCAAGGGTTGTTTAATCGAAGATATTATAGCACCCAAT
CACCTATGCAAAACTCTTCCACAAAAACACCTACAGGTGCAAAACTAAGT
AAAAGTGAGCAGCTGAAGAGGGCATTTAATGAATATGGAGCGCCAATTTG
TTGCGTTTCACGTAGAATTTCACTGATTTTCTCTTGCCGGTTTCTATGTG
CTTGTATCAAGTGGCATAAACTTGGTCCCAGCTCTGGAGCGTATTGCAAT
TGCATCACCCGCTATTGAAAAAAGTGGCAAGGGGAGCACCT
FMO11704.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17508-RA | 1228 | CG17508-RA | 82..916 | 9..841 | 3990 | 98.9 | Plus |
| CG17508-RB | 1145 | CG17508-RB | 82..641 | 9..568 | 2800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5609011..5609490 | 89..568 | 2400 | 100 | Plus |
| 2R | 25286936 | 2R | 5610062..5610256 | 566..761 | 820 | 98 | Plus |
| 2R | 25286936 | 2R | 5608716..5608797 | 9..90 | 410 | 100 | Plus |
| 2R | 25286936 | 2R | 5611190..5611274 | 760..841 | 265 | 92.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:00:02 has no hits.
FMO11704.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:22 Download gff for
FMO11704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17508-RA | 93..927 | 9..841 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:20 Download gff for
FMO11704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17508-RA | 82..916 | 9..841 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:03 Download gff for
FMO11704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17508-RA | 82..916 | 9..841 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:03 Download gff for
FMO11704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5611192..5611274 | 762..841 | 93 | | Plus |
| 2R | 5608716..5608797 | 9..90 | 100 | -> | Plus |
| 2R | 5609013..5609489 | 91..567 | 100 | -> | Plus |
| 2R | 5610064..5610256 | 568..761 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:20 Download gff for
FMO11704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1496221..1496302 | 9..90 | 100 | -> | Plus |
| arm_2R | 1496518..1496994 | 91..567 | 100 | -> | Plus |
| arm_2R | 1497569..1497761 | 568..761 | 97 | -> | Plus |
| arm_2R | 1498697..1498779 | 762..841 | 93 | | Plus |
