FMO11709.5prime Sequence
798 bp (796 high quality bases) assembled on 2012-05-29
> FMO11709.5prime
CAGTCGACATGGCCAAGGGCATTGCTTCCACTCGTTTGCAACGGGAGGAT
AGCTTCCGGCTGAGGGCATACGGCTCCATACGCAGCTTTATCGACGGCGG
CGAGCGGAAGTTGTCCAACTCCTTCTTCTTCAACCGCCAGCAAAGTCAAC
GGCCATCGGAGTGCCCGGAATACGACAGCGTCAGCATGTCGAAGCTGAGG
CGGGAGAGCAGCTTCCTGCGGCGCGGCTCCGTCAGCTCCTCCTGGTCGAT
TAGCGATAGTTCCGGCTCCGGATCGAACAACTCCGGCAACTCACAAACGC
AGTCGCAGTACCAGCAGCACCAGCAACAGCTACAGCAGCACTGTCGCGAT
CCCCTGCTCGGCTGGCTGGAGATTGCCATTAGCTATCGTGAGGCCTTCCA
CAGCCTCGACTGCACCATGGTGCGTGCGCGGGATCTGCCCGCCATGGATG
CGGCCGGATTGGCGGACCCGTACTGCAAGCTCAACATCATTACGCCGGAG
GCGCACACCAAGTACACGCGATGGCAGCGCACAAAGACGGTGCACAAGAC
CCGCAATCCGGAGTTCAACGAAACGCTGCAGTTCGTCGGCGTGGAGCCCG
AGGAGCTGGGTAACTCGCTGATTTACGTGGCCCTTTTTCGACGACGACAA
GTACGGCCACGACTTTCTCGGCGCGGCCAGGTCTGCCTTTCCACGGTGCA
CAGCACGTCGCAGTACCGGATTTCGGTGCCCTCGGCGTGGAGGACCAGTA
CAGCAACGTGGCGGAGATGGCCCAAACCTGGCCCAATGGTAAGATGCT
FMO11709.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rph-RD | 3173 | CG11556-RD | 1253..2044 | 8..798 | 3830 | 99.1 | Plus |
| Rph-RB | 3341 | CG11556-RB | 1421..2212 | 8..798 | 3830 | 99.1 | Plus |
| Rph-RA | 2826 | CG11556-RA | 906..1697 | 8..798 | 3830 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10750923..10751613 | 698..8 | 3360 | 99.7 | Minus |
| X | 23542271 | X | 10750267..10750371 | 798..695 | 415 | 95.2 | Minus |
Blast to na_te.dros performed 2014-11-28 03:00:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1058..1089 | 309..340 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2338 | 308..340 | 111 | 81.8 | Plus |
FMO11709.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:24 Download gff for
FMO11709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rph-RB | 1415..2212 | 1..798 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:25 Download gff for
FMO11709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rph-RA | 900..1697 | 1..798 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:09 Download gff for
FMO11709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rph-RA | 900..1697 | 1..798 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:09 Download gff for
FMO11709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10750267..10750370 | 696..798 | 95 | <- | Minus |
| X | 10750926..10751617 | 1..695 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:25 Download gff for
FMO11709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10644300..10644403 | 696..798 | 95 | <- | Minus |
| arm_X | 10644959..10645650 | 1..695 | 99 | | Minus |
