FMO11712.5prime Sequence
797 bp (797 high quality bases) assembled on 2012-05-29
> FMO11712.5prime
CAGTCGACATGGGTCAAAAGGCGAGCACTCCGGCGACCAGTGGCCAACAG
AGCCCACGCTCCAGGACATTCTCGAGCAGTTCAACAGGAGCCGCCGATTC
TGCGCTGCAGCAGCAGCAACACCAGCACTCGAATCCCGGCCAGAATCGTG
GCGGTAACGGCGGCGGCGGTGGCGGCAATGATACCACCGGTCAGGGTTTC
AATCTGCTGCGCACTTTGCCCGGCCTGCAGGTGTACCACAACCAAAACTC
CACGTCCATCGATCGCCAGCGGGCGCGGAGTCTCAGCTCCGTGCCGGATA
TACAGCAGCAGGCGCAGCAGCAGCAGCAACAGGGATCGATCACCTCGTCC
GGCAGCAGTCCGCATTCGCATCCGCATGCCGCGCACGGCCATCCGGCCGT
CGGTGTCACCGTATCCGTGTCCGGTAATGCGAATGCCAATAGCAACAGCA
ACTTCACAGCCGCCGGGAACAACAATGGATCCGCCATGCAGTCCTACATG
CAGCAGAGACGCACTCTCGGCGATTCCATAAGGGACATGTCAATGACCGG
CGGCAGCATCGCCGAGAGCATCGCCCTGGCCGCTTCCGCCACGTCCGCCA
ATGGGATCGGTCGTGTCTACACGGCCACCTCGCTTCCAACGCACATTTTG
GTCCTTCAATGATATCAAGTGTCCCGTGTGCAATAAGTTTGTGTTGCCAG
ACGACATCGAATGCCATTTAGTCATGTGCCTAACGAAACCACGACTCTCA
TATTATCGAGGACGTACTCTCGGACTCCAAGGGCGAGTGCGTCATTT
FMO11712.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14435-RC | 3831 | CG14435-RC | 876..1662 | 9..797 | 3835 | 99.2 | Plus |
| CG14435-RA | 2573 | CG14435-RA | 876..1662 | 9..797 | 3835 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6842521..6843046 | 534..9 | 2630 | 100 | Minus |
| X | 23542271 | X | 6841827..6841954 | 661..533 | 580 | 98.4 | Minus |
| X | 23542271 | X | 6841657..6841747 | 753..663 | 455 | 100 | Minus |
| X | 23542271 | X | 6841536..6841575 | 797..758 | 185 | 97.5 | Minus |
Blast to na_te.dros performed 2014-11-28 02:59:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-C | 11124 | TART-C TARTC 11124bp | 9180..9219 | 106..148 | 117 | 81.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6868 | 82..128 | 113 | 74.5 | Plus |
FMO11712.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:21 Download gff for
FMO11712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14435-RB | 867..1661 | 1..797 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:17 Download gff for
FMO11712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14435-RA | 868..1662 | 1..797 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:01 Download gff for
FMO11712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14435-RA | 868..1662 | 1..797 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:01 Download gff for
FMO11712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6841536..6841574 | 759..797 | 97 | <- | Minus |
| X | 6841653..6841748 | 662..758 | 96 | <- | Minus |
| X | 6841827..6841953 | 534..661 | 98 | <- | Minus |
| X | 6842522..6843051 | 1..533 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:17 Download gff for
FMO11712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6735569..6735607 | 759..797 | 97 | <- | Minus |
| arm_X | 6735686..6735781 | 662..758 | 96 | <- | Minus |
| arm_X | 6735860..6735986 | 534..661 | 98 | <- | Minus |
| arm_X | 6736555..6737084 | 1..533 | 99 | | Minus |
