Clone FMO11713 Report

Search the DGRC for FMO11713

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:117
Well:13
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG1319-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11713.5prime Sequence

483 bp (483 high quality bases) assembled on 2012-05-29

> FMO11713.5prime
CAGTCGACATGCTAGTCATAAACTCATGCAGAGCTGCCTCCAGATTGGCG
CTACGCAGCCTCAATTTGCGATCGCCGATCGCAACGCGTACTTTCTCGAC
GGGATTGGCCCTGAAAACGAAAGATGTTGTTAACATAACCTTCGTGCGTG
CCAATGGGGACAAGATTAAGACGTCCGGAAAAGTGGGTGACTCCCTGCTG
GACGTGGTGGTCAACAACAATGTGGATCTGGATGGTTTCGGGGCCTGTGA
GGGCACGCTGACCTGCTCCACCTGCCACCTGATCTTCAAGACCAGCGATT
TCGAGAAACTGCCCGACAAACCCGGTGATGAGGAGCTGGACATGCTGGAT
TTGGCGTACGAACTGACGGACACCTCGCGGCTGGGCTGCCAGATCACCCT
GTCCAAGGATATGGAGGGCCTGGAGGTACATGTGCCCTCCACCATCAATG
ACGCACGTGCCGCGGCAAGCTTTCTAGACCATT

FMO11713.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1319-RB 863 CG1319-RB 143..598 9..464 2280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4292831..4293167 128..464 1685 100 Plus
3L 28110227 3L 4292624..4292742 9..127 595 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:00:17 has no hits.

FMO11713.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:25 Download gff for FMO11713.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1319-RB 124..583 1..464 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:30 Download gff for FMO11713.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1319-RB 139..598 1..464 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:14 Download gff for FMO11713.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1319-RB 139..598 1..464 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:14 Download gff for FMO11713.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4292620..4292742 1..127 96 -> Plus
3L 4292831..4293167 128..464 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:30 Download gff for FMO11713.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4292620..4292742 1..127 96 -> Plus
arm_3L 4292831..4293167 128..464 100   Plus