FMO11714.5prime Sequence
799 bp (799 high quality bases) assembled on 2012-05-29
> FMO11714.5prime
CAGTCGACATGGCAGACACTGCCAAAGACAAGGACGTCATCGACCAGGAG
GACGTGGAGGTGGAGGAGCAGGAGGAGACCACCACCACCACCACGACGAC
CAAGAAAACCTCCCAGTGGCACAAGACTCGCACCACCAAGACTTCTGCCA
CCACAAAGACAACCACGCTCACCACCCCCGCCAAACTGTATGGCAAGGAT
CTGAGTGAGTACGATGATGTGGATGTGGAGAGCCTGCTGGCCCAGCTCTC
CCCCGAGGAGATAACCATACTGGCCAAAGAAGTGGATCCCGATGACAACT
TCCTGCCGCCAGACCAGCGCAATAGCTATGAGTGCACCAAGGAAGCCACC
GGGCCTCTCAATCGCAAGCAGCTGATCGAGCACATCAATAAGCAGGCCAT
CGAGACCCCGGATCAGCCGGAGTTCGAGCCGTTCGTTCAGGGCAAGGTTC
GTGGAAAGAAGTGGGTCCCACCGCCAAGGGATGCCCGCGACATCGAGGCC
GAAGAACAAATCGCCATTGACATGGGCGAGGAGTACGAACACGCCCTTAA
CGATGCCACGCAGGAGGAGATCATCGATCTGGCCGCCATCCTCGGCTTCC
ACTCGATGATGAATCAGGACCAGTACCACGCCTCCTTGCTCAACAAGGGT
CAGCCCGTGGGCCTGGGATGGGATGGCATTACGAAATCCACTCAGCAGAA
GCTCTTCCCTATGGATCCGCCCAACAACACAGATGTGGAGGAATCCATCA
AGCGGGTCTAGGACGATGACTCCAGCTGATTGACCTCATCTTGAACAAC
FMO11714.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tmod-RJ | 2753 | CG1539-RJ | 386..1178 | 8..799 | 3910 | 99.6 | Plus |
| tmod-RO | 3484 | CG1539-RO | 379..1171 | 8..799 | 3910 | 99.6 | Plus |
| tmod-RK | 3232 | CG1539-RK | 348..1140 | 8..799 | 3910 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30572023..30572529 | 294..799 | 2455 | 99.4 | Plus |
| 3R | 32079331 | 3R | 30571807..30571962 | 139..294 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 30548617..30548749 | 8..140 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:00:19 has no hits.
FMO11714.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:26 Download gff for
FMO11714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RJ | 380..1178 | 1..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:32 Download gff for
FMO11714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RK | 342..1140 | 1..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:15 Download gff for
FMO11714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RK | 342..1140 | 1..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:15 Download gff for
FMO11714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30548611..30548749 | 1..140 | 97 | -> | Plus |
| 3R | 30571809..30571961 | 141..293 | 100 | -> | Plus |
| 3R | 30572023..30572529 | 294..799 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:32 Download gff for
FMO11714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26374333..26374471 | 1..140 | 97 | -> | Plus |
| arm_3R | 26397531..26397683 | 141..293 | 100 | -> | Plus |
| arm_3R | 26397745..26398251 | 294..799 | 99 | | Plus |
