Clone FMO11716 Report

Search the DGRC for FMO11716

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:117
Well:16
Vector:pMK33-CFH-BD
Associated Gene/Transcriptl(1)G0334-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11716.5prime Sequence

895 bp (892 high quality bases) assembled on 2012-05-29

> FMO11716.5prime
CAGTCGACATGTTGCGTACTCTGTCACGCGTTAGCGAATTGCCCATTATT
GTTAAGCAACTGCAAAAACGTTGCCATAACAACAACAACAACAACATCAT
CATCAGCGGATGTCGGATACTTAGCAACAACAACAACAACAGCAGCATCG
ATATCATCAGGAATGGGAGATATTCATCGTCGTTTTTCGGTTTATTCCAG
AATGCAGCCCAAGCAGGTGTTTCGAAAACCAACAATTATGCCACGGAGGC
CACCGTTCAAGTGAATCGGCCCTTCAAGCTGCACCGCCTGGACGAAGGAC
CCGCCACGGAAGTGAAGCTGACCAAGGATCAGGCCCTCAAGTACTACACA
CAGATGCAGACGATCCGTCGGTTGGAGACGGCCGCCGGTAATCTGTACAA
GGAGAAGATCATTCGCGGCTTCTGTCATCTGTATTCCGGCCAGGAGGCAT
GCGCCGTTGGCATGAAGGCGGCGATGCGGGATGTGGACAACATCATCTCG
GCGTACCGTGTCCACGGATGGACCTACCTGATGGGCGTCTCACCCAGCGG
CGTACTGGCTGAGCTCACCGGTGTCCAGGGTGGCTGTGCCCGCGGCAAGG
GTGGCTCCATGCACATGTACGCACCGAACTTCTACGGAGGCAATGGCATC
GTGGGTGCTCAAGTTCCTTTGGGTGCCGGCGTTGGCTTGGCCTGCAAGTA
CAAGGGCAATGGCGGCATGTGCCTGGCCCTCTACGGTGATGGTGCCGCCC
ATCAAGGACAGGTGTTCGAGGCTTACAACATGGCCCTACCTGTGGAAAAC
TGCCTGTGATCTTTTGTCTGCCAGAACAACAACTACGGAATGGGCCCCAA
TTCTTGAGCGGGCTTTCTTGCAACACTGATTACTATACCCCGCGG

FMO11716.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0334-RC 2034 CG7010-RC 208..1084 9..890 4195 98.8 Plus
l(1)G0334-RB 1992 CG7010-RB 363..1184 64..890 3905 98.5 Plus
l(1)G0334-RD 1667 CG7010-RD 175..859 201..890 3235 98.4 Plus
l(1)G0334-RB 1992 CG7010-RB 208..267 9..68 300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4703554..4704120 269..838 2670 99.1 Plus
X 23542271 X 4702687..4702892 64..269 1015 99.5 Plus
X 23542271 X 4702532..4702591 9..68 300 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:00:25 has no hits.

FMO11716.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:27 Download gff for FMO11716.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0334-RC 162..1050 1..895 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:37 Download gff for FMO11716.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0334-RC 200..1088 1..895 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:18 Download gff for FMO11716.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0334-RC 200..1088 1..895 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:18 Download gff for FMO11716.5prime
Subject Subject Range Query Range Percent Splice Strand
X 4702524..4702591 1..68 95 -> Plus
X 4702692..4702892 69..269 100 -> Plus
X 4703555..4704119 270..837 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:37 Download gff for FMO11716.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4596557..4596624 1..68 95 -> Plus
arm_X 4596725..4596925 69..269 100 -> Plus
arm_X 4597588..4598152 270..837 99 -> Plus