FMO11717.5prime Sequence
1057 bp (918 high quality bases) assembled on 2012-05-16
> FMO11717.5prime
CAATTAGGCTGCTCAGCAACAACAACAAGTACAACAGCAACAGTTGCAAC
AACACCAGGTGGTCGTCCAGCAGAATCACCAGCAGGCGCACCAGAACAGC
TCCAATACCACAGCCGGCGTGGGCACCCAACAGCTGTTCACATACAAAAT
GGCCAGCAGTTTTCCGAATCCGGCCACGACGATGGCCCAAGTGGTGGCCA
CATCGAACGCAGCCGGCACCACGGGCTATGATTATCGTCTAAATATGGCA
CAGGCAGCCGCAGCAGCAGCCGTACCCGGCTCCCAGTGGTGGTATTCGGC
CGCCAATCAGGGACAGGTCGATGCCAATACAGCGGCGCAACTGCAGCACC
AGCAGCAGCAACAGCAACAGCAACAACAGCAGCAGCAGCAACAGCACCAG
CAGCAACAACAGATGCAACAGCAGCAGCAGCAACAGAATGTCATCAATTC
GGCGAGCCCCATGAGCAGAGTCAAGGCCGATGCCAAGCCCAGAGGCCGAA
TGACCGCCTACGCATACTTTGTACAAACTTGCAGAGAGGAGCACAAAAAG
AAACATCCCGATGAGACGGTGATATTCGCCGAATTCTCGCGGAAGTGCGC
CGAACGGTGGAAGACAATGGTGGACAAGGAGAAGAAGCGCTTCCACGAAA
TGGCCGAGAAGGACAAGCAGCGATATGAGGCGGAAATGCAGAACTATGTG
CCGCCCAAGGGAGCGGTTGTGGGACGCGGCAAGAAGAGGAAACAGATCAA
GGACCCCAATGCTCCAAAACGTTCATTGTCTGCGTTCTTCTGGTTCTGCA
ATGACGAGAGAATTAGGTGATGGCACTTAATCCCGAGTTCGGAGTGGGCG
ACATCGCCAAAGAGCTGGGACGAATGTGGTCCGATGTGATCCCGAGGTCA
GCAAAGTACGAGTCGATGGTCGAGCGGGACAGGCTCGATATGACGCGAGA
TGACGAGTATAGACGAGCGGGTATAGCCATGTCGCACGTCGATGCAGGCG
TCATGCAAGGCCAGCATAATCCCGTACTTGCCGCCGCTGCCACTCGCACG
TCCTGAA
FMO11717.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:46:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsp1-RG | 2359 | CG12223-RG | 149..1167 | 1..1007 | 4655 | 97.9 | Plus |
| Dsp1-RF | 2205 | CG12223-RF | 108..1126 | 1..1007 | 4655 | 97.9 | Plus |
| Dsp1-RE | 4240 | CG12223-RE | 290..1308 | 1..1007 | 4655 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16336296..16336743 | 7..454 | 2225 | 99.8 | Plus |
| X | 23542271 | X | 16337084..16337251 | 612..779 | 840 | 100 | Plus |
| X | 23542271 | X | 16336850..16337009 | 454..613 | 800 | 100 | Plus |
| X | 23542271 | X | 16337381..16337551 | 778..943 | 545 | 94.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:46:32 has no hits.
FMO11717.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-16 10:41:03 Download gff for
FMO11717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsp1-RC | 742..1805 | 1..1048 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:27:08 Download gff for
FMO11717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsp1-RE | 290..1353 | 1..1048 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:29 Download gff for
FMO11717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsp1-RE | 290..1353 | 1..1048 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:29 Download gff for
FMO11717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16336291..16336743 | 1..454 | 99 | -> | Plus |
| X | 16336851..16337009 | 455..613 | 100 | -> | Plus |
| X | 16337086..16337249 | 614..777 | 100 | -> | Plus |
| X | 16337381..16337555 | 778..946 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:27:08 Download gff for
FMO11717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16230324..16230776 | 1..454 | 99 | -> | Plus |
| arm_X | 16230884..16231042 | 455..613 | 100 | -> | Plus |
| arm_X | 16231119..16231282 | 614..777 | 100 | -> | Plus |
| arm_X | 16231414..16231588 | 778..946 | 94 | -> | Plus |
