Clone FMO11721 Report

Search the DGRC for FMO11721

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:117
Well:21
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9368-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11721.5prime Sequence

572 bp (-77 high quality bases) assembled on 2012-05-16

> FMO11721.5prime
CCCTCGACATGCATGCCAGATTTGCGGATCCCCAGCCAGCGTCTCCGGAC
AGCGTTGATGGAATCGAAACGGAGTCACTGGAGGCGCGGATTGAGGCCTT
CAAGCAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGCGCTCGACGATG
TGCTCCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAGTTGAGAGCCAG
AAATCGCAACAGGGCAAGGAAAAACGACCGAGTTTCGCCATACCAGATTT
TAAGAACGGCAAGGTGGTGAATCACGCTCGAGGATTCGTGGTGCGGATCT
TCGATGCCATATGCAATTGCGCCAACAACAATGCGGCGGCGGCCACGACT
CGTTTCAAGCTGAGAAGCAACAGCGGTGGAGGGGGAGGCGGCGGAGGTGG
TGGTGGCGGAGCCAGCGGAAATGGCAAGCGTCAGCAGTCTCTTTATGAGC
CGGAAACCCTAGTCCTGACCAAGAAGGAGCCCGCCGGCGAATGCAAGAAA
AAGAAGGGAGTCAGCATGGCCGATGACGTTCAAGACGGCGTTCGACTGAT
GGACGCAAGCTTTCTATACCAT

FMO11721.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-RA 1828 CG9368-RA 141..686 9..554 2565 98 Plus
CG9368-RB 1813 CG9368-RB 141..671 9..554 2330 95.2 Plus
CG9368-RD 2423 CG9368-RD 959..1281 232..554 1465 96.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19602656..19602978 232..554 1465 96.9 Plus
3L 28110227 3L 19601773..19601977 9..213 1010 99.5 Plus
Blast to na_te.dros performed on 2014-11-28 02:46:36 has no hits.

FMO11721.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-16 10:41:07 Download gff for FMO11721.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-RA 119..677 9..568 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:27:10 Download gff for FMO11721.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-RA 141..699 9..568 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:31 Download gff for FMO11721.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-RA 141..699 9..568 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:31 Download gff for FMO11721.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19601773..19601976 9..212 99 -> Plus
3L 19602042..19602060 213..231 100 -> Plus
3L 19602656..19602991 232..568 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:27:10 Download gff for FMO11721.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19594873..19595076 9..212 99 -> Plus
arm_3L 19595142..19595160 213..231 100 -> Plus
arm_3L 19595756..19596091 232..568 95   Plus