FMO11728.5prime Sequence
260 bp (260 high quality bases) assembled on 2012-05-29
> FMO11728.5prime
CAGTCGACATGTCCCTGCAAACGGGCTTGGCTTTCATTTTCACCATATTA
GCCTCTGTTAGTATCGTCGCAGCAATTATTTTGTTGGGCTGGTTCCTCAT
CTGGAAGGCGTTTCTATCGAAATTTCGTCTGGTTCGAGAGCTGTTGGGTC
AGGAGGAGCCGGAGGATCAGCAACCACTTGCTTGGGATCATCAGAATCAA
CAGCCACACCACCACGGCAGAGCCAGGAAAGCTCGCCGAGACGCAAGCTT
TCTAGACCAT
FMO11728.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vnc-RC | 1137 | CG11989-RC | 129..362 | 9..242 | 1170 | 100 | Plus |
| vnc-RD | 1176 | CG11989-RD | 168..401 | 9..242 | 1170 | 100 | Plus |
| vnc-RA | 1096 | CG11989-RA | 88..321 | 9..242 | 1170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9973093..9973248 | 87..242 | 780 | 100 | Plus |
| 3L | 28110227 | 3L | 9972923..9973002 | 9..88 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:53:18 has no hits.
FMO11728.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:04 Download gff for
FMO11728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42455-RB | 149..398 | 1..248 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:06 Download gff for
FMO11728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vnc-RA | 80..329 | 1..248 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:41 Download gff for
FMO11728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vnc-RA | 80..329 | 1..248 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:41 Download gff for
FMO11728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9972915..9973001 | 1..87 | 95 | -> | Plus |
| 3L | 9973094..9973256 | 88..248 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:06 Download gff for
FMO11728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9966015..9966101 | 1..87 | 95 | -> | Plus |
| arm_3L | 9966194..9966356 | 88..248 | 98 | | Plus |
