FMO11730.5prime Sequence
1142 bp (1020 high quality bases) assembled on 2012-05-29
> FMO11730.5prime
CAGTCGACATGTTCCGCAGCAACTTGGAGGGCAGTGGCGCAGCAGCAGTA
GGTGTTGCAAATCCCCCCTCGTTGGCTCAGTCTGGAAAGATTTTCCAATT
GCAGGATAACTTTTCTGCTTTTCACGCCAGAGGAGGGCTCAACATTCTGG
GCCTGCAGGACATGTATTTGGATACCAGTGGGGCCAACTCGTCGGCCACT
TTGAGTCCGCCCATTACGCCGGTGACCCCTGACCCGTCGACGTCTGCGCA
GTCGACGCACTTCCCTTTTCTGGCCGACAGCGCAGCCACCGCCAATTCGC
TCCTTATGCAGCGACAGTACCACTACCACTTGCTGCTCCAGCAGCAGCAG
CAACTGGCCATGGCGCAGCACCAATTGGCGCTGGCTGCATCAGCGGCAGC
GGCTAGTGCGAGTCACCAGCAAACGGACGAGATTGCGCGATCCTTGAAAA
TCTTTGCGCAGGTGACGACGGGCGCAGCAGAAAATGCGGCTGGCTCGATG
CAGGATGTGATGCAGGAGTTCGCGACCAATGGCTATGCCAGCGATGATCT
CGGTCGCATGTCCTACGGGAGTGCTCCGCCACAGGTGCAAATGCCACCGC
AGCAGCAGCATCAGCAACAGCAGGGGCTGCACCTGCCACTGGGCCGCAAT
CCTGCCCAGCTGCAGACCAATGGCGGCAACTTAATGCCCATTCCACTCGC
CACCCACTGGCTGAACAACTACCGGGAGCATCTGAACAACGTGTGGCGAA
ACATGTCGTATATACCAGCCGCTCCCAATACAATGGGTTTGCAGGCCCAA
ACAGCGGCCACTGTGTCCACCAATCTCGGCGTGGGAATGGGTCTGGGATT
GCCCGTGCAGGCGAACAGCTGCGCGGAGCTTCCAATTCCAGTACATAATA
ACTACAACAACAAGTGTACAGCGTTACACAGCCAGGCCAAGAGATCAGCC
GCACTGCGTCTTTTGTGAGAATAACAACGAACCAGAAGGCGTATCATAGC
CACTCAGTGCGAGAATAACTTTAACCGAGTGCTGTGCCCACTACGCACCT
ACTGTGGTCCCCACTCGCGGGGACATCCTGGGGATCAGTGCAACTATTAA
ATAACTGCCCCATAAATCGACTTCATCCATGGGAGAATGACA
FMO11730.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nos-RA | 2349 | CG5637-RA | 259..1377 | 4..1112 | 4925 | 97.1 | Plus |
| nos-RB | 2292 | CG5637-RB | 303..1320 | 105..1112 | 4435 | 96.9 | Plus |
| nos-RB | 2292 | CG5637-RB | 259..303 | 4..48 | 210 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19157496..19157972 | 4..480 | 2370 | 99.8 | Plus |
| 3R | 32079331 | 3R | 19158513..19158952 | 478..914 | 2055 | 98.9 | Plus |
| 3R | 32079331 | 3R | 19159052..19159156 | 937..1039 | 270 | 92.5 | Plus |
Blast to na_te.dros performed 2014-11-28 02:53:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6898 | 582..724 | 161 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2495 | 576..742 | 160 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6794 | 582..639 | 155 | 74.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1124 | 576..639 | 140 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6886 | 309..422 | 138 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6773 | 593..639 | 136 | 76.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6829 | 576..679 | 135 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6856 | 576..665 | 134 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2397 | 579..633 | 131 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6819 | 582..622 | 124 | 78 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2810..2857 | 308..355 | 123 | 72.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1105..1157 | 587..639 | 121 | 69.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1147 | 576..649 | 120 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6893 | 576..680 | 118 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..6860 | 308..354 | 118 | 72.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1587 | 579..627 | 117 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6781..6892 | 308..422 | 117 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2448 | 588..639 | 116 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2490 | 582..633 | 116 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6880..6938 | 575..633 | 115 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6769 | 589..641 | 114 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6842 | 576..639 | 113 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6923 | 579..674 | 113 | 58.8 | Plus |
FMO11730.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:06 Download gff for
FMO11730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nos-RA | 254..1336 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:10 Download gff for
FMO11730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nos-RA | 256..1338 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:45 Download gff for
FMO11730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nos-RA | 256..1338 | 1..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:45 Download gff for
FMO11730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19157493..19157972 | 1..480 | 99 | -> | Plus |
| 3R | 19158516..19158985 | 481..943 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:10 Download gff for
FMO11730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14983215..14983694 | 1..480 | 99 | -> | Plus |
| arm_3R | 14984238..14984707 | 481..943 | 98 | -> | Plus |
