FMO11733.5prime Sequence
966 bp (965 high quality bases) assembled on 2012-05-29
> FMO11733.5prime
CAGTCGACATGTCTGCGGCCACCAAATTACATAAAACAAGCTGGTGCGCC
CTGCGGCAGCTTCAACAATACAGAACTAAGGCCAACTTTAGTGGCAGTTC
TGCATCGTTAGCCAAGCGGAATGACCTGTTCAACCAGGAGCAACGCCGTC
AACGGGATGCAGTGGGTCGAATCGATAAGATCGAGGTGCGGTATCTGGGA
CTTCCCGAGGATGTCACTCTGGTGATGAACGGCAACATCTCAACGCCCTT
CAATTGCGCCCAGCATCTGAGTGAGGGGCACTGTAAGCGATCGGCACTGG
CCTTGATCGACGGCAGTGTTCCCTGGGATATGCACAGACCCTTGCAGGAA
TCCTGTACTCTGCAGCTGCTTAACTTCCATGTTTCCGAGCCACATGTGGT
CAACAAAGCATTCTGGCGCACTTGCAGCTTTATGTTGGGAGCCGCCTTGA
ACCGCGCTTTCAAGCCGGAGGCCAATCTTCAGCTCCACAGCTTTCCTGGA
CCCAATATCAAATCAGGTAGCTTCGTACACGACATTGTGCTCCAAACCCA
GAACTGGGAGCCAGGAAAAGAAGAGATGCGCGCCCTTTCGGCAGAGATGG
TTAAACTGGCTGCTCAGGATCTGCGCATCGAGCGTTTGGACGTCCAACAG
GATCTGGCCCAGGAGATGTTCAAGGATTCCAAGTATAAGAGCGAACAGTT
GCCCAGCATCTCGCAGCAGACCAATGGAAGGGTCACCTTGTATCGCCTGG
TGATCATATCGACATCTCACGCGGTCCAATGGTGGCGTCTACCAGCTTTT
TGGGGAAATGCGTCATCTCGGCTGCCCACAAAGTTGCGGAGGAGGGTCCC
TCTGGTTGCTTTCTATCGCATTCAGGGCGTTGCACTGCCGTCTGGCTTCC
ACTGATCATGTTGCATTTGGTGTATTGGAGGACCGTTCTAGAAACCTAGC
CCCGCACGACTGCCCA
FMO11733.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL39-RA | 1137 | CG17166-RA | 57..1018 | 8..966 | 4660 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14998188..14998622 | 940..508 | 1965 | 98.9 | Minus |
| 3L | 28110227 | 3L | 14998961..14999286 | 406..81 | 1615 | 99.7 | Minus |
| 3L | 28110227 | 3L | 14998796..14998896 | 507..407 | 505 | 100 | Minus |
| 3L | 28110227 | 3L | 14999537..14999610 | 81..8 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:00:31 has no hits.
FMO11733.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:29 Download gff for
FMO11733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL39-RA | 55..1015 | 8..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:41 Download gff for
FMO11733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL39-RA | 57..1017 | 8..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:23 Download gff for
FMO11733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL39-RA | 57..1017 | 8..965 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:23 Download gff for
FMO11733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14998101..14998118 | 948..965 | 100 | <- | Minus |
| 3L | 14998180..14998622 | 508..947 | 98 | <- | Minus |
| 3L | 14998796..14998896 | 407..507 | 100 | <- | Minus |
| 3L | 14998961..14999285 | 82..406 | 99 | <- | Minus |
| 3L | 14999537..14999610 | 8..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:41 Download gff for
FMO11733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14991201..14991218 | 948..965 | 100 | <- | Minus |
| arm_3L | 14991280..14991722 | 508..947 | 98 | <- | Minus |
| arm_3L | 14991896..14991996 | 407..507 | 100 | <- | Minus |
| arm_3L | 14992061..14992385 | 82..406 | 99 | <- | Minus |
| arm_3L | 14992637..14992710 | 8..81 | 100 | | Minus |
