Clone FMO11736 Report

Search the DGRC for FMO11736

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:117
Well:36
Vector:pMK33-CFH-BD
Associated Gene/TranscriptRpS3A-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11736.5prime Sequence

680 bp (680 high quality bases) assembled on 2012-05-16

> FMO11736.5prime
CAGTCGACATGTCAAAGCTCCGAATATGTTTCAAACCCGTCAAATCGGGT
CGCGTTTTCGAAGTGTCTTTAGCAGACTTGCAAAAGGATATTGATCCAGA
ACGTTCTTTTCGCAAGTTCCGTCTTATTGCAGAAGATGTTCAAGACCGTA
ATGTGCTCTGTAACTTTCACGGAATGGACTTGACTACGGACAAGTACAGG
TCGATGGTTAAAAAGTGGCAAACACTAATTGAAGCTATTGTCGAAGCAAA
GACTGTAGATGGGTACCTCTTGCGAGTGTTTTGTATCGGATTTACTGCCA
AGGATCAGCAGTCTCAGCGCAAAACATGTTATGCTCAGCAATCGCAAGTC
CGAAAGATTCGTGCTCGCATGACCGACATTATTACTAATGAAGTTAGTGG
TGCCGATCTAAAGCAGCTTGTTAACAAGCTGGCCTTGGACTCGATTGCGA
AAGATATCGAAAAAAGCTGTCAGCGCATATATCCATTACATGATGTTTAC
ATTCGTAAAGTAAAGGTATTGAAGAAACCGCGCTTCGATGTCTCAAAGCT
TCTGGAATTGCATGGCGATGGCGGTGGCAAATCCGTGGAAGCCGTTGTTT
CATCCGAGGGAGCCGTAATCGACCGCCCTGAAGGTTATGAGCCCCCAGTA
CAGGAAGCTGTTGCAAGCTTTCTAGACCAT

FMO11736.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
RpS3A-RB 854 CG2168-RB 122..775 9..662 3270 100 Plus
RpS3A-RF 1349 CG2168-RF 216..831 47..662 3080 100 Plus
RpS3A-RA 910 CG2168-RA 216..831 47..662 3080 100 Plus
RpS3A-RF 1349 CG2168-RF 122..161 9..48 200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 66276..66740 662..198 2325 100 Minus
4 1348131 4 66838..66992 201..47 775 100 Minus
4 1348131 4 67047..67086 48..9 200 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:46:45 has no hits.

FMO11736.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-16 10:41:09 Download gff for FMO11736.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS3A-RB 152..811 9..670 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:27:16 Download gff for FMO11736.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS3A-RB 122..781 9..670 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:35 Download gff for FMO11736.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS3A-RB 122..781 9..670 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:35 Download gff for FMO11736.5prime
Subject Subject Range Query Range Percent Splice Strand
4 66270..66738 200..670 99 <- Minus
4 66840..66991 48..199 100 <- Minus
4 67048..67086 9..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:27:16 Download gff for FMO11736.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 86896..87364 200..670 99 <- Minus
arm_4 87466..87617 48..199 100 <- Minus
arm_4 87674..87712 9..47 100   Minus