Clone FMO11740 Report

Search the DGRC for FMO11740

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:117
Well:40
Vector:pMK33-CFH-BD
Associated Gene/Transcriptkoko-RF
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11740.5prime Sequence

392 bp (392 high quality bases) assembled on 2012-05-29

> FMO11740.5prime
CAGTCGACATGTCCTACGCCGGCTATAGCCAGCTGCCCAGCGGCAGCGAC
CAGGAGCGCAGGCAGGCGCAGCTCGCGGCCAGCACCTACGACGTGCTACA
GCGGACGACGGACAGTATCCAGCGATCCAACCAGATTGCCATCGAAACGG
AGAACATGGGGGCGGAGGTACTCGGCGAACTGGGCGAGCAGAGGGAGTCG
CTGCTACGCACCACGCGCCGCCTGGAGGACGCCGATCAGGATCTGTCCAA
ATCGAGGGTCATCATTCGGAAGTTGAGCAGGGAGGTGCTCTACAACAAGA
TCATCCTAATCCTGATTATCATTCTGGAGGTGGGCATACTCGTCGGCTTG
CTGGTGCTGAAGTTCGCTCACCTGGCAAGCTTTCTAGACCAT

FMO11740.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG44009-RA 571 CG44009-RA 84..449 9..374 1830 100 Plus
CG44009-RB 977 CG44009-RB 510..855 29..374 1730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18400009..18400217 166..374 1045 100 Plus
3R 32079331 3R 18399792..18399953 9..170 810 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:00:40 has no hits.

FMO11740.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:31 Download gff for FMO11740.5prime
Subject Subject Range Query Range Percent Splice Strand
koko-RF 60..430 9..380 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:50 Download gff for FMO11740.5prime
Subject Subject Range Query Range Percent Splice Strand
CG44009-RA 84..454 9..380 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:27 Download gff for FMO11740.5prime
Subject Subject Range Query Range Percent Splice Strand
CG44009-RA 84..454 9..380 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:27 Download gff for FMO11740.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18399792..18399950 9..167 100 -> Plus
3R 18400011..18400214 168..371 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:50 Download gff for FMO11740.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14225514..14225672 9..167 100 -> Plus
arm_3R 14225733..14225936 168..371 100 <- Plus