Clone FMO11743 Report

Search the DGRC for FMO11743

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:117
Well:43
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5172-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11743.5prime Sequence

344 bp (344 high quality bases) assembled on 2012-05-29

> FMO11743.5prime
CAGTCGACATGCGTCACGCTGTGATCCTTGTTTTCGTGTGTTGCCTGCTG
ATCGCCTTAACCTCAGCCGGTTTGCTGGGCGGTGGAGGCGGTGGTGGTGG
CTACGGCGGTGGTGGTGGTGGTGGCTACGGCGGTGGTGGTGGTGGTCAGA
GCGGCTACGGCGGCGGTGGCCAAAAGAACGGAGGAGGCGGCCATGGAGGT
GGCGGCCAGGGAAGCTACGGAGGCGGTAGCCAAGGTGGACATGGAGGCGG
TGGCCAAGGAGGTTGGCAGAAGAACGGAGGAGGTGCAGCTAATCCACCGT
CTGATGCTGACTTGTGTTCCATGGCAGCAAGCTTTCTAGACCAT

FMO11743.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5172-RC 531 CG5172-RC 106..423 9..326 1590 100 Plus
CG5172-RD 788 CG5172-RD 106..382 9..285 1385 100 Plus
CG5172-RD 788 CG5172-RD 635..680 281..326 215 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17221547..17221773 9..235 1135 100 Plus
X 23542271 X 17222124..17222176 233..285 265 100 Plus
X 23542271 X 17222498..17222543 281..326 215 97.8 Plus
Blast to na_te.dros performed on 2014-11-28 02:53:45 has no hits.

FMO11743.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:09 Download gff for FMO11743.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5172-RC 103..423 2..326 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:19 Download gff for FMO11743.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5172-RC 103..423 2..326 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:52 Download gff for FMO11743.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5172-RC 103..423 2..326 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:52 Download gff for FMO11743.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17221544..17221772 2..234 98 -> Plus
X 17222126..17222176 235..285 100 -> Plus
X 17222503..17222543 286..326 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:19 Download gff for FMO11743.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17115577..17115805 2..234 98 -> Plus
arm_X 17116159..17116209 235..285 100 -> Plus
arm_X 17116536..17116576 286..326 100   Plus