Clone FMO11744 Report

Search the DGRC for FMO11744

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:117
Well:44
Vector:pMK33-CFH-BD
Associated Gene/TranscriptObp18a-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11744.5prime Sequence

422 bp (-55 high quality bases) assembled on 2012-05-16

> FMO11744.5prime
AAAAAAAAGTATCCCTCGACATGAAGGTTGTGTGCAGCATAGCTGTACTA
TGGATTTGCTTGATAACTATGTGGCAATCAGCTGGCCGCGTTAACGCAGA
GGGTTGCCTAAAGCACCACAATCTGACCAGTGCCCAAGTGCAGGCAGTGG
CTCCATCCACTCCCGTTGCGGATGTTCCAGTGGCCGTTAAGTGCTATAGC
CGGTGTCTGATCCAGGATTATTTCGGTGATGATGGGAAAATCGATCTGCA
GAAGGTGGGAAAGCGAGGATCTCAAGAGGACCACGTGATTTTGTCCCAGT
GTAAGCAGCAGTTCGATGGCGTCACCAATCTGGACACGTGCGACTATCCA
TACCTGATTCTCCAGTGTTATTTTAAGGGCAAGCAGAGTGGAACTATCGC
CTCGGCAAGCTTTCTAGACCAT

FMO11744.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
Obp18a-RA 734 CG15883-RA 21..409 16..404 1930 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19135406..19135739 404..71 1670 100 Minus
X 23542271 X 19135793..19135848 71..16 265 98.2 Minus
Blast to na_te.dros performed on 2014-11-28 02:47:07 has no hits.

FMO11744.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-16 10:41:23 Download gff for FMO11744.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp18a-RA 17..415 11..413 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:27:26 Download gff for FMO11744.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp18a-RA 17..415 11..413 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:44 Download gff for FMO11744.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp18a-RA 17..415 11..413 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:44 Download gff for FMO11744.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19135400..19135738 72..413 98 <- Minus
X 19135793..19135844 20..71 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:27:26 Download gff for FMO11744.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19029433..19029771 72..413 98 <- Minus
arm_X 19029826..19029877 20..71 100 -> Minus