FMO11749.5prime Sequence
1115 bp (931 high quality bases) assembled on 2012-05-16
> FMO11749.5prime
CTTTTGGCTAGGCGATCCTGCTAGTGGATCGACCCGGGGCTAAAGCTTAT
CGATCAGGCAGTGGCTACCACAGCGAGCAGTCGGAACCAGTTGGCTTATC
AGCAACAGGGAACGCACACTCGAGTTACGGAGGCGACCAGCAGCAGCCTA
TTTACCATCGGGATTCGGCATGCCCGCCGCATTTTACGGGTCTGGTTGCA
TATCCCCACGACTGTCATCGCTATGTGAACTGCTTCGATGGCAGCCCCAC
CATTCAGACGTGTTCGCCCGGAACTCTGTTCAATGACAGGACCCAGGTGT
GCGATCATCCCAGCAATGTGGTTTGCCCTTCAGCGGAATCTGCATCTACT
CGACTGGGAAGACTTAGGCAATTAGATAGTGAACCCAAGTGTCAACCGGG
AGTGAATGGATTGCAACCGCATCCTTCGGATTGCAGCAAGTTTCTTAACT
GCGCCAATGGTCAAGCTTTTATTATGGACTGCGCACCAGGAACTGCTTTT
AGTCCAGCATCACTGGTATGTGTGCACAAGGATTTGGCCAAATGCGGATC
GGGAACTGGTGCAGTACGAGATGATACCTCCGGCACCGGCTACCCTGCGT
TGCCTTTTGATGACTTGGGCTGTCCACCCGGTACACGTGGGCTTCGTCCA
CATCCGCACGACGTGCACAAGTATTTTGAGGTGCGGAATTGGGGTTAAGC
CTCAGGTGGAACAGTGTCCACGGGGCCACATCTTCGATGGCTCCTCTTCG
GTATGTGTGTATTCTGACTCCCCTCGGACCTCCTCTTCCCTCTTCACGTC
GGCTGAGATTCAGTCAACTATCTCTTGTGTCCAGTGGAGCCGTTGGCCAA
TTTGTTCATCCCTTTGATCAACAAAATTCCTTAGTTGTAAGATGGTAATC
GCTGTGCAACTGCCAACCTAATTATGTGTTTAGCATATCGAGGCGCTACT
GTCAGTTAAAGCACATTAGCCTTAACGACTATGTCCACTTTATTTATCCT
CCAATTCAGCTATGAGTATTCACCTTATCCTAATGCCCTGTCTGTAACAT
AACGGCCATCTTTCTTGTAAATCCCCTACCGATGCTTAAAAGTACGGTTC
AGTGCCTCGTTGGGT
FMO11749.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tequila-RG | 8628 | CG4821-RG | 162..1267 | 3..1105 | 4770 | 96.7 | Plus |
| Tequila-RF | 7389 | CG4821-RF | 162..1267 | 3..1105 | 4770 | 96.7 | Plus |
| Tequila-RC | 2263 | CG4821-RC | 162..1267 | 3..1105 | 4770 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:47:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9075064..9075623 | 30..589 | 2785 | 99.8 | Plus |
| 3L | 28110227 | 3L | 9075671..9075866 | 588..784 | 935 | 99.5 | Plus |
| 3L | 28110227 | 3L | 9076020..9076265 | 785..1020 | 540 | 90.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:47:19 has no hits.
FMO11749.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-16 10:41:27 Download gff for
FMO11749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tequila-RE | 158..1228 | 1..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:27:32 Download gff for
FMO11749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tequila-RA | 158..1228 | 1..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:50 Download gff for
FMO11749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tequila-RC | 160..1230 | 1..1062 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:50 Download gff for
FMO11749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9074802..9074829 | 1..29 | 93 | -> | Plus |
| 3L | 9075064..9075622 | 30..588 | 99 | -> | Plus |
| 3L | 9075672..9075866 | 589..784 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:27:32 Download gff for
FMO11749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9067902..9067929 | 1..29 | 93 | -> | Plus |
| arm_3L | 9068164..9068722 | 30..588 | 99 | -> | Plus |
| arm_3L | 9068772..9068966 | 589..784 | 99 | -> | Plus |
