FMO11750.5prime Sequence
1135 bp (998 high quality bases) assembled on 2012-05-16
> FMO11750.5prime
CAAAACAGAATGTTACATTACAATCATGTAAGGAAGAGAATTTATTATCA
CTAGAAGAGGAGGACTCCGACGAGGAACGCGAGCTAACCAACCTTAATTG
GCTTTTGAGAAATCAAAATTTAACTTGGCCGAAAACCATTGATTACAACC
CAACCGAAATTTTAAATTCGAAAAGGAACACAGAACCAACTCACAAGTCA
AGAGTCCATGATAAACAAATCAAAATGTTTTATTCTACTCGTGAAAACAC
AGATAAAATATCACATATAATTTTAGAGGCTAATGCGCAAAAATCTATAA
CAAAGAGACCAACTGCATCAGAACGCTTTGAAATTTTCGTCAATAAAATC
AAAAGAGACTTAACAGAATATGAAAAGTTGGCTAGCAAGTATGAAACCGA
CGTGACCGAGAAACCGCCTTTTAATTATTCACATATAATAGGAATGGCTA
TGTTACAAAATGGGCGAATAACTTTACAACAATTATGTTCTTGGATAGAG
GCCAAGTTTGCATTTTTTAGAGTTCGAAAGAAATGGAATAATTCCATTAG
GCATAACTTATCATTACACCATTGCTTTCGTAACCGAAAAAGAGAAGAAA
GGGGAAAAGGTGGTTACTGGGAGCTGGGGGTCGACCCAAAAAAAGTGTGA
CCGGAAACGAATTCGAAATAGGAAAATTTTTCATCCAACGCAAAATCAAA
CTGCTAAGTTACAGTATGAACACTTAACAGAAATACAACCAAGCAAAATC
TGCTCGAAAAAATCATTCAAGACACATTAAAAATCGAAGACAAGTAGTCT
TCCAGAAACATCTGAGCAAATATATTTAATGTCGTGCCCCATAAAAAACA
CAATATAGCTGATGAAAATGATGGGGCAACGTCAGTTACAACATTAAATA
AAGATGACATTTTAAAAAAGAAGTCTGAGCTTGACCTATTGTATCAAGTA
CTGATCATTTTTACAGAATCTCCAAAACTTAACTGTTTAATTCGCACAAG
ACGGATACTACAACCACCCCCATTTCTGCAGAAAAAAATTCTTGCAATTC
AATTAATTTCTAATTCCGAAATGAACACCCGGGCTGCTTCAATTCAAATT
GCGTGGAAAACAAAAGTATACACCTGGATGTATTC
FMO11750.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:47:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32006-RA | 1684 | CG32006-RA | 108..1226 | 1..1115 | 5000 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:47:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 152439..152914 | 540..1011 | 1820 | 96.9 | Plus |
| 4 | 1348131 | 4 | 151776..152130 | 1..355 | 1775 | 100 | Plus |
| 4 | 1348131 | 4 | 152193..152378 | 354..539 | 930 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:47:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1093..1318 | 872..639 | 132 | 55.1 | Minus |
FMO11750.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-16 10:41:28 Download gff for
FMO11750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32006-RA | 105..1223 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:27:34 Download gff for
FMO11750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32006-RA | 108..1226 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:52 Download gff for
FMO11750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32006-RA | 108..1226 | 1..1115 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:52 Download gff for
FMO11750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 152195..152378 | 356..539 | 100 | -> | Plus |
| 4 | 151776..152130 | 1..355 | 100 | -> | Plus |
| 4 | 152439..152921 | 540..1017 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:27:34 Download gff for
FMO11750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 172402..172756 | 1..355 | 100 | -> | Plus |
| arm_4 | 172821..173004 | 356..539 | 100 | -> | Plus |
| arm_4 | 173065..173547 | 540..1017 | 96 | -> | Plus |
