Clone FMO11762 Report

Search the DGRC for FMO11762

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:117
Well:62
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5539-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11762.5prime Sequence

637 bp (636 high quality bases) assembled on 2012-05-29

> FMO11762.5prime
CAGTCGACATGTGTTTCTTTGGCCTTGTTTCGCAGTTCCTGTTCTTCGTT
TACGGCACCATGGGACCGGCCTGGCAAACCTATAAGACTCTGAACAGCGG
AGACGAGGAGTTCCTGGCCTGGGCCAAATACTGGATAGTTTACGCCTTCC
TGGTCACCTTCGAGGTGCTGGCGGACGTCTTCCTCTCCTGGCTGCCGCTC
TACATGCCCACCAAGTTGCTCCTGGTCGTGTGGATCGTGCTGTCCGCTCC
GGCCGCCAATGTCTGGATATTCGACGCCATCCTGCGTCCGGTGCTGGCAA
AGCGGCAGGAGGAGATCGATCACTTCCTGCACCGGGGCAAGGAGAAGCTC
CTGATCGACGCCCTCGCTTCGATGACTCAGCTGGTGGCACAGACCCAAAT
CTCTGTACTGCCTTTCGTGTCCAGCTTCTGGTCGAGATCTTTTCACTGCT
CCCCTTAGGACTTCCGATCTGTTGCAGGACTCCACTGGAGAAGGAATTGG
AGGCAGAACTTCCGAGGATACTGACTCGGCCAACGTCTCTGTCCAAAATC
TGTCCAGTGGTTCCAGTCCCGTTGGCAGCTTAGAGCACCTCCGTGACGAC
TCTGAGGAGCTTCTGGTGGGCGTTTTCAAATGCCACC

FMO11762.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5539-RB 1334 CG5539-RB 129..755 9..637 3005 98.7 Plus
CG5539-RA 1078 CG5539-RA 129..755 9..637 3005 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23804939..23805554 9..625 2975 99.2 Plus
Blast to na_te.dros performed on 2014-11-28 03:00:50 has no hits.

FMO11762.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:33 Download gff for FMO11762.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5539-RA 126..755 6..637 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:57 Download gff for FMO11762.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5539-RA 126..755 6..637 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:33 Download gff for FMO11762.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5539-RA 126..755 6..637 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:33 Download gff for FMO11762.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23804936..23805565 6..637 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:57 Download gff for FMO11762.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19692459..19693088 6..637 98   Plus