Clone FMO11777 Report

Search the DGRC for FMO11777

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:117
Well:77
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42823-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11777.5prime Sequence

479 bp (479 high quality bases) assembled on 2012-05-29

> FMO11777.5prime
CAGTCGACATGCCCAACGTGATCGTCAACCTGTCATTAATTTTCTTATTC
TTGGGTGGTATTTTCCATCTCAATGAAGCCCAGACAACGGATTGTTCGAA
TTCGTGTATTTTTCGAGCAAGATGCACTCCCTACTACAAGGATTTGGTCT
GGTCAGTGGTGGACCGCGTTTGTCGGGTCTTTCAAAACGGTTGCATCTTT
GCCAATGAAAATTGCATGAGAGCCAATCGCTGCTTGCCACCCATGGTAGC
CACCACAAAGGAAGAGTGTACGAAGGAGATCTACTGTCCAAGGTGGTGTT
CCCGAGGAGCTCCGCCGGTCTGCGCATGGTTTCCCTATACAGACAGTAAT
GGGAATACCGGAGGTCGAGACATGTCATTCGGAAGTCGCTGTCTACTAGA
CATGTATGCCTGCCGTAATGAACAGGCCTATGTCAACGAACCACGTATAG
GATCGTGCACAGCAAGCTTTCTAGACCAT

FMO11777.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG42823-RA 508 CG34053-RB 4..457 8..461 2270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17404874..17405106 240..8 1165 100 Minus
3R 32079331 3R 17404630..17404815 426..241 930 100 Minus
3R 32079331 3R 17404538..17404573 461..426 180 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:54:51 has no hits.

FMO11777.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:22 Download gff for FMO11777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42823-RA 2..460 7..465 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:03 Download gff for FMO11777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42823-RA 2..460 7..465 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:24 Download gff for FMO11777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42823-RA 2..460 7..465 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:24 Download gff for FMO11777.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17404630..17404815 241..426 100 <- Minus
3R 17404874..17405109 1..240 98   Minus
3R 17404534..17404572 427..465 94 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:03 Download gff for FMO11777.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13230256..13230294 427..465 94 <- Minus
arm_3R 13230352..13230537 241..426 100 <- Minus
arm_3R 13230596..13230831 1..240 98   Minus