Clone FMO11781 Report

Search the DGRC for FMO11781

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:117
Well:81
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG17279-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11781.5prime Sequence

695 bp (695 high quality bases) assembled on 2012-05-16

> FMO11781.5prime
TTTCTAGAGATCGAGAAATGCAGGGCTGGCGATTCCATCTGCATAGCGGA
AACAGTCACCAGGATTCTGCGCTTGTATCCGAAGGGTCTGCCTTCCATTG
GATTGGTTGCTCTGGACTCCATTGGATTCGAGGATGTCGTCGTTAGTCGG
TTGGAACCAGATGGGTCATCTACTTTTGATTTGAAATTCCCTAACCTAAC
CGTAATCGGATTCGCAGACTCCACAGTGACGGAGGCAAAGGGATTCGATG
CGGATTTGCCTCGGGTCCTCGAGTTGAGTGGCTGGATTCCATTGCTGAAA
CTCAATGGAACTTACGAGATGAGGGGCAGTTTGCTGACTATGCCCATTCA
TGGCAAAGGTCAAGCCAAGGTGGAGATCAGAGAATGCCGCGTTCGTTGCA
AAGTGCGAGTTCTGGAGGATCTCCGAGACGATGGCAAGCTATATGCCGGA
ATATCCAAGGTCAAGTGCTTGCTGGATGTGCAGGGCATGCACTTGAACTT
GGAAAATCTTTTCAACAATCCTGAAATGAGCGATGCCATGAACGTTGTGG
CCAACACAAAGTGGCTGGAAATTTGGCATACCCTTCGCAGGGGTATCACC
TCTGCGGTGGATCAGTTGGTCGAGTCGATTCTCCAGCGAGTAGCTAATAG
GTTACCATATGACGATTTGTATAGGGACGCAGCTTTCTAGACCAT

FMO11781.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17279-RB 810 CG17279-RB 59..730 7..678 3315 99.6 Plus
CG17279-RC 742 CG17279-RC 201..662 217..678 2280 99.6 Plus
CG17279-RC 742 CG17279-RC 59..201 7..149 700 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21050346..21050824 485..7 2380 99.8 Minus
3R 32079331 3R 21050094..21050287 678..485 940 99 Minus
Blast to na_te.dros performed on 2014-11-28 02:47:45 has no hits.

FMO11781.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-16 10:41:47 Download gff for FMO11781.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17279-RB 26..702 1..678 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:27:44 Download gff for FMO11781.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17279-RB 54..730 1..678 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:01 Download gff for FMO11781.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17279-RB 54..730 1..678 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:01 Download gff for FMO11781.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21050094..21050286 486..678 98 <- Minus
3R 21050346..21050828 1..485 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:27:44 Download gff for FMO11781.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16875816..16876008 486..678 98 <- Minus
arm_3R 16876068..16876550 1..485 99   Minus