FMO11787.5prime Sequence
962 bp (960 high quality bases) assembled on 2012-05-29
> FMO11787.5prime
CAGTCGACATGACAACCTCGATGCAGCCGAGCAAGTACACGGGCCTGGTC
GCCGACCTGATGCCCAACATCCGGGCGATGAAGTACTCCGGCCTGTTCAT
GCACAACTTCACGGGCGGCAGTGCCTTCATGAAGAAGGTGTACTCCTCCG
TGCACCTGGTGTTCCTCCTCATGCAGTTCACCTTCATCCTGGTCAACATG
GCCCTGAACGCCGAGGAGGTCAACGAGCTGTCGGGCAACACGATCACGAC
CCTCTTCTTCACCCACTGCATCACGAAGTTTATCTACCTGGCTGTTAACC
AGAAGAATTTCTACAGAACATTGAATATATGGAACCAGGTGAACACGCAT
CCCTTGTTCGCCGAGTCGGATGCTCGTTACCATTCGATCGCACTGGCGAA
GATGAGGAAGCTGTTCTTTCTGGTGATGCTGACCACAGTCGCCTCGGCCA
CCGCCTGGACCACGATCACCTTCTTTGGCGACAGCGTAAAAATGGTGGTG
GACCATGAGACGAACTCCAGCATCCCGGTGGAGATACCCCGGCTGCCGAT
TAAGTCCTTCTACCCGTGGAACGCCAGCCACGGCATGTTCTACATGATCA
GCTTTGCCTTTCAGATCTACTACGTGCTCTTCTCGATGATCCACTCCAAT
CTATGCGACGTGATGTTCTGCTCTTGGCTGATATTCGCCTGCGAGCAGCT
GCAGCACTTGAAGGGCATCATGAAGCCGCTGATGGAGCTGTCCGCCTCGC
TGGACACCTACAGGCCCAACTCGGCGGCCCTCTTCAGGTCCCTGTCGGCA
ACTCCAAGTCGGAGCTAATTTATAATGAAGAAAGGATCCCGGCACCGACA
TGGACATGTCGGGCATCTACAGCTCGAAAGCGGATTGGAGCGCTCATTTC
CGAGCACCCTCGACACTGCAGTCCTTTGGTGGGACAGGGGCGGAGGCTAT
GGGTTGGTGAAT
FMO11787.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orco-RB | 1743 | CG10609-RB | 14..969 | 9..961 | 4585 | 98.8 | Plus |
| Orco-RA | 1929 | CG10609-RA | 200..1155 | 9..961 | 4585 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5409031..5409548 | 830..314 | 2525 | 99.6 | Minus |
| 3R | 32079331 | 3R | 5409616..5409923 | 316..9 | 1540 | 100 | Minus |
| 3R | 32079331 | 3R | 5408801..5408932 | 961..831 | 505 | 93.9 | Minus |
Blast to na_te.dros performed 2014-11-28 03:01:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy10 | 6006 | gypsy10 GYPSY10 6006bp | 2432..2480 | 335..288 | 125 | 75.5 | Minus |
FMO11787.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:39 Download gff for
FMO11787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or83b-RB | 11..969 | 3..962 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:13 Download gff for
FMO11787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orco-RA | 193..1155 | 2..962 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:45 Download gff for
FMO11787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orco-RA | 193..1155 | 2..962 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:45 Download gff for
FMO11787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5408800..5408933 | 831..962 | 92 | <- | Minus |
| 3R | 5409031..5409545 | 317..830 | 99 | <- | Minus |
| 3R | 5409616..5409927 | 1..316 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:13 Download gff for
FMO11787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1234522..1234655 | 831..962 | 92 | <- | Minus |
| arm_3R | 1234753..1235267 | 317..830 | 99 | <- | Minus |
| arm_3R | 1235338..1235649 | 1..316 | 98 | | Minus |
