FMO11788.5prime Sequence
1117 bp (1019 high quality bases) assembled on 2012-05-29
> FMO11788.5prime
CAGTCGACATGGCTGATTTACTAAAGGCTCTGAATATTACGGGCAACCTG
CTGGCAGGCCTCGAAGATGCCGGCAATCTAACGATTGCAACTGCCACAAC
CACAACTTTAAGTGAAGGCCTTAATGGCAATGCAACGACCTTGGATGCCG
CAGCATCCACCAGTAGTGGCGAAAAACTCGATCTTGGCGGCTTCGATCTG
CCCGGCAACTACTCCATACTCATTAACAAACTGGAGCAGCTGGCCTTGGG
CTTGGATTCGGCCTTGGGAAATTTCACCATCGATCGCCAGGAGGTCGAGA
TCAATTTGAGCGGCGCAGCCACGGCCAACGACGTTGCCGATGTAGCCGAC
GATCTCTTTGATGTCCTGCCAGCTGCTCGGGCACCTCCGCCGCATATAGC
ACACGGATCAAGGATATATACCGGCGACGATGGCCAGGACTTTGCCCACG
TGGTCAGCGATATCTGGATTGGAGTCATCCTTACACTGCTCATCGTCTTT
GTGATATTCTTCATATGCGCTTGCTTCGTTTACCACAAATTCCAGCAGTG
GAAGAACTCATACCGTGCCAATCACAGTGATCCCACGATCGAGATCTGCC
GCCGCTGTCCGCCGGACTACGAGGCGGAGTCCCTGCCCTCGTACACGATT
GTTTCCGGACTGCCGACGTACGATGATGCACTGGAGGAGTTCCGCAAGGC
GGGCATTATCCTCACACCCGCCATGGTGCCCATCATCAAGATCTTCGAGT
GCAACGAGACCGGCAAGGAGCAGCGGTGGGCTACAGCCTGGTGGAGACGA
CATAGCGAGTGCGGATGCTGCCGCGGATTAATGTGTCGCTGGCCTCGACC
ACCTGCATTTGTGGCAACTCCTCGCCCACCTCATCGCTGCCCAGTTACTG
TGCCGCCACGGCGGCTGTGATGGCAGCGGCGGCTGCTGCTCCTCCCCAGT
GATCGAACTATCACCGGAACACTGCTCGTTGTTCCCAGAGCGTCTTCTCC
CTGCAGATCTCATTCAATAACTCGGTGCCCCGGCAAGTCGCCGCTCAGAA
TCATTCTGCCTGAGAATCCCGAGCGGTGGGAAAAATACCGCCGGTGTTTG
GTTCCATCTCGAAGCCA
FMO11788.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| comm3-RE | 2055 | CG42334-RE | 664..1752 | 9..1098 | 5040 | 98.2 | Plus |
| comm3-RD | 1522 | CG42334-RD | 131..1219 | 9..1098 | 5040 | 98.2 | Plus |
| comm3-RC | 1402 | CG42334-RC | 564..1099 | 562..1098 | 2275 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15631898..15632450 | 561..9 | 2765 | 100 | Minus |
| 3L | 28110227 | 3L | 15613487..15614022 | 1098..562 | 1960 | 95 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:01:23 has no hits.
FMO11788.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:39 Download gff for
FMO11788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm3-RD | 131..1233 | 9..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:17 Download gff for
FMO11788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm3-RD | 131..1233 | 9..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:47 Download gff for
FMO11788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm3-RD | 131..1233 | 9..1115 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:47 Download gff for
FMO11788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15613473..15614022 | 562..1115 | 95 | <- | Minus |
| 3L | 15631898..15632450 | 9..561 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:17 Download gff for
FMO11788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15606573..15607122 | 562..1115 | 95 | <- | Minus |
| arm_3L | 15624998..15625550 | 9..561 | 100 | | Minus |
