FMO11794.5prime Sequence
817 bp (-60 high quality bases) assembled on 2012-05-16
> FMO11794.5prime
CAAGCAATCGTTTTCAACGTGGATGATTACATGGAACTGCGGAGCAAACA
TCGCATAATGGGTGCTCCAGTGGGCACATTTGAACACAAAAGGCTGGAGT
CCTAATCAATCCACTCTGCCCGTGGAGCTCAGTAAATTTGAAACCCAATT
GCTTTTGGATGAGAATATAGCAAAGTTAGTTGATAAATCCAAAGATCTAA
AGGCTAAACCCACTGCCGAGAAACTTGAGGAGTGCAAGGCGGATTTTGAA
TCCCGGTTACTGGGACAGGAGGAAGCATTGAAAACGGAGAAACTACGGGA
AACTGAACGATACATGGATAAGATTCTGACGGGAAAACGCAAGAAGTTGC
TCAAGCAGGGCAAAAATGAATTGGCTGCCGCTCTGACTGATAAGGATGTA
CTATTGGATATGTCTGTGAATTTCAAATTCGATCGCCAAAATGCCTTGCT
GGAGGTGCATTGTGAACATCCCACGGATCACTCTGCGCAAATAGTTACCG
GTCCCATTGTGCACACCAATTCCCTGAAATACCGCGTTTTCAAAGATCTG
TGGAGGCGCGGAAAGTACGTGACTTCCGGCGATGCATTTGGAGCGGACTT
TCTGGTTTACCCCGGCGATCCCATGATCTACCACGCCTCCCACATTGTAA
TTTTGCACGAGCAACCTGTAATTAAGCCCCTGGACTGATAGCAAAAGTTC
GTCTATCGGTAATTGTCAACAAAAGCTGCGTTTTCGCCTACGAGATGGTA
AATAATGAGGAAGAATACATTACCAACGGTCGCATGGTGCATCTTGAAAA
GCAAGCTTTCTAGACAT
FMO11794.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33260-RC | 902 | CG33260-RC | 44..839 | 8..800 | 3785 | 98.7 | Plus |
| Trl-RF | 2613 | CG33261-RF | 1..405 | 400..800 | 1880 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14760593..14760904 | 791..483 | 1395 | 98.7 | Minus |
| 3L | 28110227 | 3L | 14761292..14761552 | 374..114 | 1305 | 100 | Minus |
| 3L | 28110227 | 3L | 14760967..14761075 | 482..374 | 530 | 99.1 | Minus |
| 3L | 28110227 | 3L | 14761640..14761727 | 113..25 | 365 | 96.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:47:49 has no hits.
FMO11794.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-16 10:41:47 Download gff for
FMO11794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33260-RC | 38..843 | 1..803 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:27:47 Download gff for
FMO11794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33260-RC | 38..839 | 1..800 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:02 Download gff for
FMO11794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33260-RC | 38..839 | 1..800 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:02 Download gff for
FMO11794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14760590..14760904 | 483..793 | 98 | <- | Minus |
| 3L | 14760967..14761074 | 375..482 | 99 | <- | Minus |
| 3L | 14761292..14761552 | 114..374 | 100 | <- | Minus |
| 3L | 14761640..14761726 | 26..113 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:27:47 Download gff for
FMO11794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14753690..14754004 | 483..793 | 98 | <- | Minus |
| arm_3L | 14754067..14754174 | 375..482 | 99 | <- | Minus |
| arm_3L | 14754392..14754652 | 114..374 | 100 | <- | Minus |
| arm_3L | 14754740..14754826 | 26..113 | 96 | <- | Minus |
