Clone FMO11796 Report

Search the DGRC for FMO11796

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:117
Well:96
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG1126-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11796.5prime Sequence

566 bp (566 high quality bases) assembled on 2012-05-29

> FMO11796.5prime
CAGTCGACATGTTAAAGTCGCTAGCTCCGATCGAAGGAAACCAACAGCCC
GTGCTGCAGTTGCTCTGGGAGGACAAGGAGGTCAAATTTGATGTGCCTCA
ACTGCACAAGAACCTGCGGAGCGGAGAACGAGTGCTCGACTACATTTACC
ACATCGAAGACAGCAAAGGAAATCCGGGGGACACTGGTCGCCTGATGGTA
ACCAATTTGCGAATTATATGGCACTCGCTGGTCCACAAGAAGTACAATCT
GTCCATTGGCTATGCTCGGATTGGCAACACCAACACTCGGGTAGTTCATA
TGCACTCCAAAGCAAGGATAGCCAGCCAGGCCCTCTACATCCTGGCGGTA
AGCAACGAGACCCGCTTTGAGTTCCTTTTCACCGACGTATCTGGGGAAAC
GTCGCGTCGCGATCAGCCGATCTTCGCCAGCGTGTTCGACGTATATCACC
TTTATCAGCGTACTTATCTCTACCGCGACCTGAAGCTGCGCGGAGCCATC
GTTCAAGCGGGTCAACTGGTTATCCTACCAGATGAGGAGGTCTTTAGCCA
TGTGCAGGGCGTGTGG

FMO11796.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1126-RA 1228 CG1126-RA 17..574 9..566 2790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4816696..4816891 253..448 980 100 Plus
3R 32079331 3R 4816487..4816635 104..252 745 100 Plus
3R 32079331 3R 4816952..4817069 449..566 590 100 Plus
3R 32079331 3R 4816334..4816429 9..104 480 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:01:09 has no hits.

FMO11796.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:37 Download gff for FMO11796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1126-RA 1..558 9..566 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:06 Download gff for FMO11796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1126-RA 1..559 9..566 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:39 Download gff for FMO11796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1126-RA 17..574 9..566 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:39 Download gff for FMO11796.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4816334..4816428 9..103 100 -> Plus
3R 4816487..4816635 104..252 100 -> Plus
3R 4816696..4816891 253..448 100 -> Plus
3R 4816952..4817069 449..566 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:06 Download gff for FMO11796.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 642056..642150 9..103 100 -> Plus
arm_3R 642209..642357 104..252 100 -> Plus
arm_3R 642418..642613 253..448 100 -> Plus
arm_3R 642674..642791 449..566 100   Plus