FMO11802.5prime Sequence
1151 bp (1033 high quality bases) assembled on 2012-06-25
> FMO11802.5prime
CAGTCGACATGAAGTTGGTTGTCTATCTCTATTTCTCCATGATTGTGCTG
GGCGTCCAGGCCTGGCCCAGTGTAAAGCGGTCCTTTGAGCTTTTCCCCAA
CCCTGCGATGCCGCACAATGTGCACACGGTCTCAGATTGCATGCATGTGG
CCTCCGAGGCAGGTGACTACATCTTCAAGAAGCTCAACCCACTCAACTCG
GCCCTCAACCGGGAGGCCGCCCTGCTCGAACTGGAGGTGGCAGGAGCTGC
GGCAGTGGGTGTTGTTCCGGGGGAGGGCGCAGCGGCAGGGGCAGGAGCAG
GAGCTGGAACGGCAGCAGATGTCCAGGAACTGCAGCCGGAGGTATGTGGG
CTTTATGTGATTGGGGAGCCAGACACGATTGTGGAGATTACAATGAAGCA
CTACGATGCGAACTGCGAGACAGGAGCCCTAATGGCGTTTGTCGACGGCT
GGGAGCTGAATGGCGAGTACTTTCCGGGCATTAAGGATCACCATCGACCG
CTGGAGGAGCGCGTTTACGAGTTCTGCAACAACTACAGACAATGGCCCCG
AGTTAGTAACAAGAAGTTCTTCCGCTCGAGCCAGAATGCCGCCTTGCTCC
AATACCGAATTCCCGTTCGAGGCTCCTTTGTGGCCAATGTGCGGTTCCAC
AAGATCACGCAACCCTGTAACGTTTTGGTCCAGGACACGGCCGCCATGTA
CAAGATGACCAACTTTGGGCAGGCTCGCAACTGCACCATCTCGGCGCTCT
TTCCGGCTGTGGTCTCGCTGGCCAGTTTGCGGATTGGCGGCAAGAGTGTG
CGGGCCCAGGCCGAAAGTCAACTACGATTGTCAATTGCCCAGCGATCGCT
TAGAAATCGGTGGAGCCGCCGGTCTGGATGCCATTGGAATGGAGCAGCCA
GTGCCGTGTGCGGTGCCTCCAGTGACTTGGGTCCGAGCAGCCATCTTTTG
CGGCGTGAGCACGTGCGGCTGGTGTCCTCCGGTCGCTAATCAGAACCAGG
CGCCATTGTCTGCGCAAGGCGATGTGCCGGAACATGGAGATCGCCACGCC
TCATCTGTGCCCTCGCAACTTTCTAGAACATTCGTTGGGCGCGCGGTCCC
AGGTATTGACTAATCCTATCTAATCCTATACCTATCACTAGCCTAGTACT
T
FMO11802.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15537-RC | 1600 | CG15537-RC | 359..1417 | 9..1064 | 5025 | 98.9 | Plus |
| CG15537-RB | 1466 | CG15537-RB | 359..1417 | 9..1064 | 5025 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30436218..30436524 | 437..131 | 1535 | 100 | Minus |
| 3R | 32079331 | 3R | 30435657..30435820 | 828..664 | 775 | 99.4 | Minus |
| 3R | 32079331 | 3R | 30435360..30435599 | 1064..829 | 700 | 95.5 | Minus |
| 3R | 32079331 | 3R | 30435882..30436001 | 663..544 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 30436052..30436160 | 545..437 | 545 | 100 | Minus |
| 3R | 32079331 | 3R | 30438301..30438379 | 135..57 | 395 | 100 | Minus |
| 3R | 32079331 | 3R | 30443190..30443241 | 60..9 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:15:49 has no hits.
FMO11802.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:03 Download gff for
FMO11802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15537-RB | 1..1062 | 9..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:17 Download gff for
FMO11802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15537-RB | 351..1423 | 1..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:45 Download gff for
FMO11802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15537-RB | 351..1423 | 1..1071 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:45 Download gff for
FMO11802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30435354..30435599 | 829..1071 | 94 | <- | Minus |
| 3R | 30435657..30435820 | 664..828 | 99 | <- | Minus |
| 3R | 30435882..30436000 | 545..663 | 100 | <- | Minus |
| 3R | 30436053..30436159 | 438..544 | 100 | <- | Minus |
| 3R | 30436218..30436519 | 136..437 | 100 | <- | Minus |
| 3R | 30438301..30438376 | 60..135 | 100 | <- | Minus |
| 3R | 30443191..30443245 | 1..59 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:17 Download gff for
FMO11802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26261076..26261321 | 829..1071 | 94 | <- | Minus |
| arm_3R | 26261379..26261542 | 664..828 | 99 | <- | Minus |
| arm_3R | 26261604..26261722 | 545..663 | 100 | <- | Minus |
| arm_3R | 26261775..26261881 | 438..544 | 100 | <- | Minus |
| arm_3R | 26261940..26262241 | 136..437 | 100 | <- | Minus |
| arm_3R | 26264023..26264098 | 60..135 | 100 | <- | Minus |
| arm_3R | 26268913..26268967 | 1..59 | 93 | | Minus |
