FMO11805.5prime Sequence
1141 bp (1028 high quality bases) assembled on 2012-06-25
> FMO11805.5prime
CAGTCGACATGTTGGCACAGGAGATTTCACCTACGGAAATCGGCAAACAC
GCAAACATTATAAGAGCTGCACAGGAGGAATTGGCAAACATGGACGTTCT
TGTATGTGGACGATGTCTCCGGGCCTACAACTTCGTGGAAGAGTTTCAGG
CCCACAAAGAGGACGCCTGCGAAAAGGAAAATGCAAATTTGAAGGAATCG
CTCGATCCCAAGCCCACCATCTGGGCTTTTACGCTATGGAAAGCTACTCA
GCTGCACTCGCGCAAGGACGCGTCCGGCAGCTCGTGGGCCTTGTACCAGC
ATTGGGTAAAACTAGACGATAGCGTCCGCGAGCCGTGGATTGTGGCTGGG
AAGACCATACAGTCATTCGGCAAAATTGCACACGGACAACTCCAGGACAT
GCCTGTGCGAATAACAAAGACTGTGGTCAATCCAAACAATAACAACACAT
CAAATAGCAACAACAACAACACGAGCGTCTCCCCTACCAGAAAATCACCA
ACCGGTAAGCTGCCTACGTTAGCCAATCAACTAAAGGATACAGAAAACGA
AAGACCCAAGTCCAAGCCGAGTACACCAACGCCTTCCTCAGTTCCCTCTG
CCGGAGCCGTGAAGCCGAACAACCGCATAGCCATTAGGATCGATTCCAAG
ACAGATCAGCGCACCGAAGAGCCAGTGGAAAAGATTGTCGCTAAGCGCTT
CAATCCGCGCCGTAAGACCCACGAGTATTTGGTTAAGTGGGTTGATCGCT
CGCATCATGAAAACACCTGGGAGGTGATGGCCAATCTCGAGCGTGTGCCA
TACTTTTTGCAGATGTTCGAAAAGCAATTGGCACGCCAAAAACTTACTAG
GGAGAAGGGTCTGGATGCTCTGAAGCGCATGCAGTCATCAGGACAAACGC
AAAGTCAGATACTGCCGCCCCACAACAGCCCACTTCCGGCGTCGTCGCAG
TATCGCCGTCTTCTCGGCCATCTTCGAACTTCCAGACCCAGGCTATGGAT
GCCTTTAAGGCGGTGGGTCAATTGAAACCGTGCCGGAGATGGATCCTCCT
CGCCTCCTCGGCAAACGAGATGATCCTCCCACGGAACAGATGTCACATTC
TTTCCTGAGCCGATCCAGCGAGCTTAACATATCGAACTCAG
FMO11805.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chro-RE | 4056 | CG10712-RE | 376..1458 | 9..1089 | 5110 | 98.7 | Plus |
| Chro-RD | 3915 | CG10712-RD | 235..1317 | 9..1089 | 5110 | 98.7 | Plus |
| Chro-RA | 3871 | CG10712-RA | 191..1273 | 9..1089 | 5110 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22876812..22877388 | 1068..493 | 2445 | 97.6 | Minus |
| 3L | 28110227 | 3L | 22877450..22877877 | 492..65 | 2140 | 100 | Minus |
| 3L | 28110227 | 3L | 22877937..22877994 | 66..9 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:15:56 has no hits.
FMO11805.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:04 Download gff for
FMO11805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chro-RA | 148..1230 | 9..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:22 Download gff for
FMO11805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chro-RC | 91..1173 | 9..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:49 Download gff for
FMO11805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chro-RA | 191..1273 | 9..1089 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:49 Download gff for
FMO11805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22876790..22877388 | 493..1089 | 97 | <- | Minus |
| 3L | 22877450..22877875 | 67..492 | 100 | <- | Minus |
| 3L | 22877937..22877994 | 9..66 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:22 Download gff for
FMO11805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22869890..22870488 | 493..1089 | 97 | <- | Minus |
| arm_3L | 22870550..22870975 | 67..492 | 100 | <- | Minus |
| arm_3L | 22871037..22871094 | 9..66 | 100 | | Minus |
