FMO11808.5prime Sequence
1118 bp (944 high quality bases) assembled on 2012-06-25
> FMO11808.5prime
CAGTCGACATGCAGAGCAGTGCCGGCGGAGCGTCGGGGGGCAGCAACTAC
GAGGACGTGGCCGCCGCCCGCCGAGGACGCTTCCGTGTCACCTCCTCCAC
GCCACAGGGCCCGCCCGAAACGACGCTCGGCCGCTTTCGTCTCATGCCCA
CGTCTAATTATGGCGCCATTTCGCCAATCCTCCAGCGGGGTCGCTTCGCC
GTGATTCCCGAAGAGCCCCAAGCCGGTTCCCCCGCATTGGGAACGCCTCC
GCCGGGCGGCCGAACAGCGCGTTCTCCATCGCCCGAATGGGACTTCGACA
TCGAGCAGGAGCAGGATGGCAGCCTCGGAGGAGCCGGCCGGATGCCAGGA
TCACGACCCTCCAGCGCTCCCGCATAGCCAAATGCCAAGGCGGCCAAGAA
GGCCTACAAAAAGATGGAAAAGGAGCAGCGTCGCCAGGAGTAGGAGCAGT
CGCGACGGGAAAAGGAGGCCCGCAAGCTGGAGCGCGAGACGGCGAGAAGG
AACGAACGCGAGGCGGCCAAGCTGGAGAAGATCAACAGGCACAGCGAGAA
GATCTCACGCAGCACGGAGCGAATGGCCATGGCCGGTGTGGGATCGCGGT
CCGGTTCGCTGGAGCGGAGGCGAAGCGGCGAGGACTCGCCCGTGCTCAAT
CAGTCGACGGTGCACGGTATAGCGTCACCCAACCGAAGGCCAACGATATT
CGACGTTTTCCGACCGCGTGCGAAATCCGATGCGAAGCGGCAGAAGGAGA
AGCATCTGCTGGATCCCTCGTCCGCCGACAGCAGCGCCACCAGCAGCACC
TACTCCGTTTCCGGCGGCACAGCCCGGCCACGAGCTCGGCAGCAAGTGGA
GCAGAGAGCGGCGGCAGCACCAGACATGGCGCACGGGAGAGCCGTGCCTT
ATGAACTCCATGAGGTGGCCATGCAGAACTTTATCCATCGTCAGCATCCC
GCCGTGACGATAATCGAGCGCCGACGGCACGCATCACGGCAAGAAGCAAG
TTCAAGAACGCAGTGCCCATTCCGCATCAAGGCAGCGACGCGCAATAATA
ACCACACGGTGGATCGCGGTGCGTTCAACTCTTTCCACGTTCGCTCGAAT
GACAGGTCATGGAATTTG
FMO11808.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RA | 3614 | CG17299-RA | 611..1725 | 9..1113 | 4780 | 96.3 | Plus |
| SNF4Agamma-RB | 3348 | CG17299-RB | 440..1554 | 9..1113 | 4780 | 96.3 | Plus |
| SNF4Agamma-RF | 4769 | CG17299-RF | 2066..2880 | 309..1113 | 3280 | 95 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21178579..21179203 | 430..1044 | 2315 | 95.4 | Plus |
| 3R | 32079331 | 3R | 21155233..21155388 | 154..309 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 21154927..21155075 | 9..157 | 730 | 99.3 | Plus |
| 3R | 32079331 | 3R | 21178275..21178399 | 306..430 | 610 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:16:04 has no hits.
FMO11808.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:05 Download gff for
FMO11808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RB | 436..1504 | 1..1066 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:27 Download gff for
FMO11808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RB | 436..1504 | 1..1066 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:53 Download gff for
FMO11808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RB | 436..1504 | 1..1066 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:53 Download gff for
FMO11808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21178278..21178399 | 309..430 | 99 | -> | Plus |
| 3R | 21154923..21155071 | 1..153 | 97 | -> | Plus |
| 3R | 21155233..21155387 | 154..308 | 100 | -> | Plus |
| 3R | 21178580..21179203 | 431..1044 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:27 Download gff for
FMO11808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16980645..16980793 | 1..153 | 97 | -> | Plus |
| arm_3R | 16980955..16981109 | 154..308 | 100 | -> | Plus |
| arm_3R | 17004000..17004121 | 309..430 | 99 | -> | Plus |
| arm_3R | 17004302..17004925 | 431..1044 | 96 | | Plus |
