FMO11809.5prime Sequence
1162 bp (1052 high quality bases) assembled on 2012-06-25
> FMO11809.5prime
CAGTCGACATGCCGTCGTCAGCAATAAATAAAGCAGCACGCAGTGTTGCC
AATGCGATTCAATTGCTGGCAATCGTTCTCTATTGCTGCTGCATGGTGCA
TGGACAACAGCAGCAGCAGCAGCAGCAGCAGCTACAACCACAACAGCAGC
AACACTTGAAGTACCAGCAATTGCAATACCAAATGCAGCAGCAATATGAA
TACCAGCAGCAGCAGCACTACCAGCAGCAGTTTCAGCAGCAGCAGCAGCA
ACAGCAGCAACAGCAGCAGCAGCTGCAACAGCAACAGCAGCAGCAGCAAC
ATCTGACACCCACGGCAGCACTTGCCCAGCAGCAGCAGCAGCATGAGGAG
CAAATCGACTTGCTGTCCACTCAACCAACTCAGCTGCTGCAGACAGGTGT
TTCCCTGATTGTGGAGGATTCAAAGGGCTCGGGCGATGGTAGCGGAAGTG
GAATTGGTGCCACATCCAACCGTCGTCGTACTGCTCAGTTGGCAACTCGT
AAGCGGAAACGACGCCCCCAACTTCCGCTGGCCACAATGGGGGCCACGGA
GGAGGATTCTGGTCCAGAACCGACATCAGCTTACTGGCGCGGTCATGTGG
AGGATGATGCAGACGCACTGCGAAGAAGGAATCAACCCTTGGTGAGGGAA
CCCATGGCCGCTCTCGAAAGAGATCGCGAACGGGAGAAACAGCGCAAGCG
AGTAGAGCCCACGGATGCCAGTCCGCAGGGCAGTAGTCCCAGCAAAGCCT
ATCGTCGCCCATATGGCCAGGCCAAAAAGGAACCCATTGTCGATGCTGGC
GCTGCGACACCTACCAAAACTTCTGTGGATTTGAAGAACATCCTGAAGAA
TTCCGGAGGTCTGAGTCTCAGTGAAATCCTGCAGCAGAAAATCTTTCGTT
GGACGATCTGCTCAAGGGTAAACAGAATGCTCTGTTGGCACTGCAAACCA
CAGCCGTTGCCCCACCAGCCTCCACGTATCTTCCCCAGGCTCACGAGCGG
ATCCCCGAAAAGCTGTCTTAACCACAGAACAAACAGGTGTTGCGGAGATT
GCCTGCCTGCGTTATACCACACTAGCACCACTGGCCAACGATTGAGGATG
AATTCCGTGATAGCAAAACAGCCAAATTCCTTACGCCCCTGCACGGCTCC
TTAAGCTTCTTG
FMO11809.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14431-RC | 7289 | CG14431-RC | 744..1896 | 7..1157 | 5250 | 97.9 | Plus |
CG14431-RB | 5404 | CG14431-RB | 744..1896 | 7..1157 | 5250 | 97.9 | Plus |
CG15772-RB | 1691 | CG15772-RB | 639..804 | 144..303 | 250 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6962172..6962851 | 381..1056 | 3115 | 98.2 | Plus |
X | 23542271 | X | 6917558..6917934 | 7..383 | 1885 | 100 | Plus |
X | 23542271 | X | 5752977..5753152 | 108..283 | 235 | 75.6 | Plus |
3L | 28110227 | 3L | 7764799..7764890 | 295..204 | 235 | 83.7 | Minus |
X | 23542271 | X | 5752989..5753154 | 144..303 | 225 | 77.1 | Plus |
3L | 28110227 | 3L | 14751582..14751629 | 152..105 | 195 | 93.8 | Minus |
X | 23542271 | X | 10700442..10700496 | 104..158 | 185 | 89.1 | Plus |
Blast to na_te.dros performed 2014-11-28 03:16:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6944 | 107..336 | 521 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2309..2533 | 104..320 | 504 | 71.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..7034 | 105..384 | 495 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2509 | 138..343 | 456 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2539 | 98..301 | 444 | 68.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6929 | 127..348 | 443 | 70.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2546 | 105..284 | 378 | 69.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..7035 | 104..337 | 374 | 65.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2769..2980 | 105..320 | 350 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2546..2899 | 20..369 | 346 | 59.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2417..2680 | 98..358 | 294 | 59.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6835..7095 | 98..358 | 280 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6869..7168 | 105..395 | 244 | 57.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1055..1179 | 80..208 | 239 | 67.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1049..1164 | 112..232 | 224 | 68.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1532..1613 | 98..178 | 209 | 75.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1088..1170 | 105..187 | 190 | 69.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1633 | 105..212 | 166 | 63.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6973..7200 | 131..340 | 160 | 59.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1112..1176 | 105..170 | 156 | 72.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1595 | 123..200 | 147 | 65.4 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8581..8683 | 138..242 | 142 | 61 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1011 | 109..150 | 129 | 78.6 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3247..3340 | 103..193 | 123 | 62.9 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 128..192 | 105..169 | 117 | 68.2 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9158..9222 | 105..169 | 117 | 68.2 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3261..3349 | 108..196 | 112 | 58.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5633..5701 | 119..187 | 111 | 62.3 | Plus |
FMO11809.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:06 Download gff for
FMO11809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14431-RB | 1..1139 | 9..1143 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:29 Download gff for
FMO11809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14431-RB | 739..1884 | 1..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:55 Download gff for
FMO11809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14431-RB | 739..1884 | 1..1143 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:55 Download gff for
FMO11809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6917553..6917934 | 1..383 | 99 | -> | Plus |
X | 6962175..6962938 | 384..1143 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:29 Download gff for
FMO11809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6811586..6811967 | 1..383 | 99 | -> | Plus |
arm_X | 6856208..6856971 | 384..1143 | 97 | | Plus |