Clone FMO11809 Report

Search the DGRC for FMO11809

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:118
Well:9
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG14431-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11809.5prime Sequence

1162 bp (1052 high quality bases) assembled on 2012-06-25

> FMO11809.5prime
CAGTCGACATGCCGTCGTCAGCAATAAATAAAGCAGCACGCAGTGTTGCC
AATGCGATTCAATTGCTGGCAATCGTTCTCTATTGCTGCTGCATGGTGCA
TGGACAACAGCAGCAGCAGCAGCAGCAGCAGCTACAACCACAACAGCAGC
AACACTTGAAGTACCAGCAATTGCAATACCAAATGCAGCAGCAATATGAA
TACCAGCAGCAGCAGCACTACCAGCAGCAGTTTCAGCAGCAGCAGCAGCA
ACAGCAGCAACAGCAGCAGCAGCTGCAACAGCAACAGCAGCAGCAGCAAC
ATCTGACACCCACGGCAGCACTTGCCCAGCAGCAGCAGCAGCATGAGGAG
CAAATCGACTTGCTGTCCACTCAACCAACTCAGCTGCTGCAGACAGGTGT
TTCCCTGATTGTGGAGGATTCAAAGGGCTCGGGCGATGGTAGCGGAAGTG
GAATTGGTGCCACATCCAACCGTCGTCGTACTGCTCAGTTGGCAACTCGT
AAGCGGAAACGACGCCCCCAACTTCCGCTGGCCACAATGGGGGCCACGGA
GGAGGATTCTGGTCCAGAACCGACATCAGCTTACTGGCGCGGTCATGTGG
AGGATGATGCAGACGCACTGCGAAGAAGGAATCAACCCTTGGTGAGGGAA
CCCATGGCCGCTCTCGAAAGAGATCGCGAACGGGAGAAACAGCGCAAGCG
AGTAGAGCCCACGGATGCCAGTCCGCAGGGCAGTAGTCCCAGCAAAGCCT
ATCGTCGCCCATATGGCCAGGCCAAAAAGGAACCCATTGTCGATGCTGGC
GCTGCGACACCTACCAAAACTTCTGTGGATTTGAAGAACATCCTGAAGAA
TTCCGGAGGTCTGAGTCTCAGTGAAATCCTGCAGCAGAAAATCTTTCGTT
GGACGATCTGCTCAAGGGTAAACAGAATGCTCTGTTGGCACTGCAAACCA
CAGCCGTTGCCCCACCAGCCTCCACGTATCTTCCCCAGGCTCACGAGCGG
ATCCCCGAAAAGCTGTCTTAACCACAGAACAAACAGGTGTTGCGGAGATT
GCCTGCCTGCGTTATACCACACTAGCACCACTGGCCAACGATTGAGGATG
AATTCCGTGATAGCAAAACAGCCAAATTCCTTACGCCCCTGCACGGCTCC
TTAAGCTTCTTG

FMO11809.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14431-RC 7289 CG14431-RC 744..1896 7..1157 5250 97.9 Plus
CG14431-RB 5404 CG14431-RB 744..1896 7..1157 5250 97.9 Plus
CG15772-RB 1691 CG15772-RB 639..804 144..303 250 77.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6962172..6962851 381..1056 3115 98.2 Plus
X 23542271 X 6917558..6917934 7..383 1885 100 Plus
X 23542271 X 5752977..5753152 108..283 235 75.6 Plus
3L 28110227 3L 7764799..7764890 295..204 235 83.7 Minus
X 23542271 X 5752989..5753154 144..303 225 77.1 Plus
3L 28110227 3L 14751582..14751629 152..105 195 93.8 Minus
X 23542271 X 10700442..10700496 104..158 185 89.1 Plus
Blast to na_te.dros performed 2014-11-28 03:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6944 107..336 521 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2309..2533 104..320 504 71.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6743..7034 105..384 495 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2509 138..343 456 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2336..2539 98..301 444 68.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6929 127..348 443 70.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2546 105..284 378 69.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..7035 104..337 374 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2769..2980 105..320 350 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2546..2899 20..369 346 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2417..2680 98..358 294 59.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6835..7095 98..358 280 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6869..7168 105..395 244 57.9 Plus
roo 9092 roo DM_ROO 9092bp 1055..1179 80..208 239 67.4 Plus
roo 9092 roo DM_ROO 9092bp 1049..1164 112..232 224 68.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1532..1613 98..178 209 75.9 Plus
roo 9092 roo DM_ROO 9092bp 1088..1170 105..187 190 69.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1521..1633 105..212 166 63.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6973..7200 131..340 160 59.7 Plus
roo 9092 roo DM_ROO 9092bp 1112..1176 105..170 156 72.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1518..1595 123..200 147 65.4 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 8581..8683 138..242 142 61 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 970..1011 109..150 129 78.6 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3247..3340 103..193 123 62.9 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 128..192 105..169 117 68.2 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9158..9222 105..169 117 68.2 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3261..3349 108..196 112 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 5633..5701 119..187 111 62.3 Plus

FMO11809.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:06 Download gff for FMO11809.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14431-RB 1..1139 9..1143 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:29 Download gff for FMO11809.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14431-RB 739..1884 1..1143 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:55 Download gff for FMO11809.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14431-RB 739..1884 1..1143 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:55 Download gff for FMO11809.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6917553..6917934 1..383 99 -> Plus
X 6962175..6962938 384..1143 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:29 Download gff for FMO11809.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6811586..6811967 1..383 99 -> Plus
arm_X 6856208..6856971 384..1143 97   Plus