FMO11812.5prime Sequence
1085 bp (977 high quality bases) assembled on 2012-06-25
> FMO11812.5prime
CAGTCGACATGACCTCTCGCAAGCGCAGTGGCAGCGGCTCCACCAAGCGG
CCCAAGGAGAAGGTGGTCTATATATATGAGCTGTTGTGCCGGGGCGAGGA
TCCCAGCAGCGAGAGTCCCGAATTTTGGAACGAGTTCTTCCTGCTGCAGC
CGAACTTCGAGGCGCTGGAGAATGAGATTGGCAAACTCAACAACGAGCAG
CTGCAGCTGGTGAAACCGAACCTGAACACCCTCTTCCAGAGGTGCATCGA
AATGCTTGACACGGAAGATCATCCTAAGCGGCTGTGCAACAGCCTACACA
CGCTGTGCTCCCTGTTCTACGGGATCTTTAAGAAGTCCAACGCAGAACCA
ACATTAAACATCCTAAACGAGATCTTCGGCCATGAGAAGATGGACGAATG
GCTGAAGCTACTCATGCAGTACTGCAATCGCATCCTCCTGGGCGATGTGC
CCGAAAACGCTCGATTTATGTGCCTCAAACTGCTGCAGGTTCTGGTTACG
GGCACGGATAACGTCAACCAGAACGCCCTCTTCGAGCATCTAATGATGCA
CAGCATGTTCGACGCCTTTGTTCGGCTACTCAGTGATCCTACGTTCCGTA
GCCAGCATGGACACGACATCGTTATCCTACTTACTATCCTGGTCAACTAT
CGCAAGCATGAAGCCACTAACCCCTATGTGGTGCAGCTCTCCATACTCGC
TGATGAGCTGGCTTTAAATGGCTATGGCCAAATGATATCGCAATCGCTAA
TTGATTTCTGTCGCCAGTACATTCAGAGCCTTAACAATGTGCAATCCTCT
TCCTGGGTTTCGTCGCTGTCGATTTTGTGGGCAACATGTTTGTGTCGGAT
GAAGGATGCGAACGGGTGCAGCAGATCAAGGCGATTAATGGCCTTCTACT
TGCCCTTTTACGAGGCAGTGCACCTGATTCGGAACTTCATCACAACTCTG
GCTCCCACGCAGGCAGAGTCCAGTGCCCCGCCCTCGCCCAGTAACACATT
GAGTCTTGGCCCACTGTGCGGGATTTTATCTAATGCACCCATCATTGACA
TTAACCCAGTAATCCCACCAATTCTGCCTGGTGGT
FMO11812.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8379-RB | 2450 | CG8379-RB | 144..1216 | 8..1084 | 5025 | 98.2 | Plus |
| CG8379-RA | 2447 | CG8379-RA | 144..1213 | 8..1084 | 4970 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8824951..8825408 | 264..721 | 2290 | 100 | Plus |
| 3R | 32079331 | 3R | 8825632..8825964 | 721..1053 | 1310 | 95.5 | Plus |
| 3R | 32079331 | 3R | 8824686..8824889 | 61..264 | 1020 | 100 | Plus |
| 3R | 32079331 | 3R | 8824554..8824610 | 8..64 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:15:43 has no hits.
FMO11812.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:01 Download gff for
FMO11812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-RB | 141..1217 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:11 Download gff for
FMO11812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-RB | 140..1216 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:43 Download gff for
FMO11812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-RB | 140..1216 | 1..1085 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:43 Download gff for
FMO11812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8824550..8824608 | 1..62 | 95 | -> | Plus |
| 3R | 8824688..8824889 | 63..264 | 100 | -> | Plus |
| 3R | 8824952..8825408 | 265..721 | 100 | -> | Plus |
| 3R | 8825633..8825991 | 722..1085 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:11 Download gff for
FMO11812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4650272..4650330 | 1..62 | 95 | -> | Plus |
| arm_3R | 4650410..4650611 | 63..264 | 100 | -> | Plus |
| arm_3R | 4650674..4651130 | 265..721 | 100 | -> | Plus |
| arm_3R | 4651355..4651713 | 722..1085 | 94 | | Plus |
