FMO11814.5prime Sequence
1134 bp (1026 high quality bases) assembled on 2012-06-25
> FMO11814.5prime
CAGTCGACATGATCAGGGGAATAGAGGAGCACGTACATATATATGTCCGC
GCCCACTTCCGAGCCTCGCTGGAGACCTCGGAGTACGAGAACACCTCGAA
CCTATTCCATGTGACGGCCGCCGAGCAGACCGCCGCTCTTCTGGCCCGCT
GCGAAATCCTGCTGGCTGCAGCCAGTTCTGCATCGGGATCGGGATCGGGA
CTGGAACTGGGATCAGGGCTGGGATGCGCAGACGAGCAGGCGGCAGCTAA
CCATCGTTCCAGCCTGGTCGACTGTGTCGATAGCAAGGTGGGCGCGGAGA
CCGGTCCCAGCGGTTATCTGGAGATGCTTGCCTCCCCGTCACCCTCGAAA
AGCTCACTGTCCGCCTCGCGGGAGTACATTGATTTGGGCAGCAGCGGATC
CCTGGATCGTTGCTCCGTCAATCAACCGGTTCCGGCAGCGAAGGACAAGG
AGCCACATCAGCAGCTCTACGAGATTTGCCAGGGCCAGGGAGCGGGCCAG
GACGAGGATGAGGCGCAACAGGCGATCACCTTTACCCACGAGGTGTTCAT
TGACTGCCCGTATGCAGATCTGCCCGCTGGCCACTTGTCCCTGCAGAGGT
CAACAAAGTACGGACAGCTGCAGAGGATTGTGCCCAAGCGGCTGTTCTTC
GACCAGACCCGCAAGTGCTACTGTGGCATCCTCAACGATTGGATGCTGTG
CTATGCCGACGGCCCGACCGCCTGTCGACCCAGCAGCACGCTCTACTTGA
AGAGCTCCTCCATCGAGATTGAACACTTCGGAGAGGGGAAGCGGCGCGAC
ATCTGCTTCCAGATCACAACAGACGACCCCAACAAGAAGTTCGTGTACCA
GGCCAACAACGAAGTCGATGCCAAAGAGTGGATACACGCCATTGAGGCGG
CCATCCGCGGAGATGCTGGTGCTCATTCAGCGTTAAGACTCCACCGCCCC
GGAACTTGCCCACGCCGCCGGTCCAAAAGAAATCCACCTACACAGCAGCG
GATTATCATCTACGAGGAGCCTCGCCCGTGTATGGTCTCCATAGACCTCC
CTCCCTCCATGATGCTCCTTAGCCTGCCCGGAAAAAGCACAGGCCCAAGC
GCCCTTCGCCCGACGTTCAGTACGATGTGGCCCA
FMO11814.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blow-RB | 2270 | CG1363-RB | 54..1173 | 8..1129 | 5200 | 98.2 | Plus |
| blow-RD | 2612 | CG1363-RD | 431..1515 | 43..1129 | 5025 | 98.2 | Plus |
| blow-RA | 2632 | CG1363-RA | 451..1535 | 43..1129 | 5025 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7581599..7582354 | 1117..358 | 3255 | 97 | Minus |
| 2R | 25286936 | 2R | 7582614..7582928 | 357..43 | 1575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:16:17 has no hits.
FMO11814.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:07 Download gff for
FMO11814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blow-RB | 49..1086 | 1..1039 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:32 Download gff for
FMO11814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blow-RB | 49..1086 | 1..1039 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:00 Download gff for
FMO11814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blow-RB | 49..1086 | 1..1039 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:00 Download gff for
FMO11814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7582614..7582928 | 43..357 | 100 | <- | Minus |
| 2R | 7584135..7584174 | 1..42 | 92 | | Minus |
| 2R | 7581672..7582354 | 358..1039 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:32 Download gff for
FMO11814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3469177..3469859 | 358..1039 | 99 | <- | Minus |
| arm_2R | 3470119..3470433 | 43..357 | 100 | <- | Minus |
| arm_2R | 3471640..3471679 | 1..42 | 92 | | Minus |
