FMO11815.5prime Sequence
1124 bp (1041 high quality bases) assembled on 2012-06-25
> FMO11815.5prime
CAGTCGACATGCATGATCCAGGGAGCAGCAGCCGCCTATCAGGAGCCGCA
TCCGCAGCAGCAGGGACCGCGTCAGCTGGAGCTATAGCTGCAGCCGTAGG
AGCAGCTGCTGCCTCGCGGCACGACAATAAGACACAGCTTGGCAACGGCA
GCCGCAGTAAGATGTGGATATGCATCAAATGTTCCTATGCCTACAACCGA
CTCTGGCTCCAGACTTGCGAGATGTGCGAGGCCAAAGCCGAACAGCAGCA
ACAGCAGTTGCAGCTGCAACAGCAGCAGCAGCAGCAGCAGCAGCACCACC
ACCACCACTTGCAGCAGCAACAGGCAGAAGCACCCCGCGACGAGCCATGG
ACCTGCAAGAAGTGCACCCTGGTTAACTACTCGACAGCAATGGCCTGCGT
GGTGTGCGGCGGCTCCAAGCTGAAAAGCATCTCTTCCATCGAGGACATGA
CGTTGCGAAAGGGCGAGTTCTGGACCTGCAGCCACTGTACGCTCAAGAAC
TCGCTGCACTCGCCGGTCTGCAGTGCCTGCAAGTCCCACCGCCAGCCGCA
GCTCTCGATGGCCATGGAGGCGGTACGGGAGCGACCGGATGGTCAGTCGT
ACGAGGAGCAGGATGCTGCAGCCGTCGGGGGCGGAGGAGGCAGTGCCCAC
CAATCGGGCGCCAATGAGGTCAAGGCGCCTACAGCCTTGAACCTACCGCT
AACTTCGGTGGCGTTGCCCATGCCCATGCTGCAGCTTCCAACGTCAACAG
CGGCTGGTCTGCGCGGCTCACGCAGTCCCTCGCCCAGGATGCAGCTGCTG
CCATCACTCCAGCAGCAGAGGAACTCCAGCTCATCGGGCGCTATACCTAA
ACGTCACAGCACCGGCGGCTCCATTGTGCCACGGAACATTTCCATCGCTG
GTCTGGCCAATTACATTTGCAGCAGGGCCAGGGAGTCGCTCCCGCATCGG
TAGTGTCTGCTTCTGGAGCTGGGATCTGGAGCTGGAGCTGTCGGAGTCCA
GTACAGCACAAAGAGTTGCAGTGTCCCGCGTGCACGTACGAATAACTGTG
CCGCTTCCGTCGTTTGGTACATCTGCTCGAGTCCGCCGGCTTGCCAGCGC
AGTTGGGCGAGGCGTTTGGCTAGT
FMO11815.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sol-RF | 5153 | CG1391-RF | 1673..2788 | 9..1120 | 5220 | 98.4 | Plus |
| sol-RB | 5592 | CG1391-RB | 2112..3227 | 9..1120 | 5220 | 98.4 | Plus |
| sol-RA | 4990 | CG1391-RA | 1510..2625 | 9..1120 | 5220 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21354477..21355238 | 325..1086 | 3440 | 97.9 | Plus |
| X | 23542271 | X | 21354095..21354413 | 9..327 | 1595 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 03:16:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 629..712 | 127..44 | 186 | 69 | Minus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 660..734 | 108..34 | 132 | 64 | Minus |
FMO11815.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:08 Download gff for
FMO11815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sol-RD | 1697..2814 | 9..1124 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:34 Download gff for
FMO11815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sol-RC | 1504..2627 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:02 Download gff for
FMO11815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sol-RA | 1504..2627 | 1..1124 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:02 Download gff for
FMO11815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21354091..21354413 | 1..327 | 98 | -> | Plus |
| X | 21354480..21355278 | 328..1124 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:34 Download gff for
FMO11815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21225118..21225440 | 1..327 | 98 | -> | Plus |
| arm_X | 21225507..21226305 | 328..1124 | 97 | | Plus |
