FMO11816.5prime Sequence
1171 bp (1047 high quality bases) assembled on 2012-06-25
> FMO11816.5prime
CAGTCGACATGGCTGACCCCAATTTGCACGACAATCAAGTAATAAAAGAT
GGTGAATCTTCCGAAAGCTGGCCTGCATTCAATAGGAGGAGCCCGAATCC
CTCTTTCTCCAGCGTTGATCAACAAGGAAATAAAACTAAGGCACGAAGGC
AGCACCAAAGCCGTTCACATTCTTTTCACTCAACAGCAAATAGTGTTCCT
GAATCGCAGGGACCTCTTGAATCTCGATCTGATCTGAACGCCAAGACATC
ATCGAAAAGCGAACGACCATATATTTCCACATCCAATTCAAGCTGGACCT
CTGAATCCAGCTCCGGAAGTCCACCAGATTCAGGAGAATCGTCTTCGTTT
TCGACTTCATCTTCGCTTTCATCATCATTATTATGTGCTCCAGAACCGAA
ATCTATTAACTGGAGCAACCCGAAATCTTCTTCAAATATCTCAAATGAAA
CCACAACTTCTGCGGGACAGGTTGGCGGCATTCCGAGCTTTTCAGAAAGT
GATGACCAGGGAAGTGTCGACTCTGAAACAGTCTCTAACATCAGAAAATC
AACTTCCCTCATAGAACTTAAAGACAATTTCAATACAATCATTGACGAAG
ATAATAATCAACAGCTCTCTAACGAGGGCAACATATTGTCCCCTGGGACA
GTTTCTATTTCCAATTTTCCAAGCTCGAATGAAGTAGCAAATGGATTGAT
TGATGAGATGGAACAAGACCTACTCTCGAAGCAACATTCTACATCGACCC
CAATAAATAAAAGTAATACAATGGAAAAAGAATTGCTCCCATTGCAATGT
TCTTCATTTCCACCGACATCATCCGAAGGTAATATTTTAAAACCCAGGGT
CAATCCTGTGCCATTAGTCCCAGCTCAAATACAGAGTATGAATCAAATGG
AAAAAATTACAACATTGAAAAAAGGTGTCCCATTGCGATATAGTTCAGAT
GAAAAGGAATCCGATGTCTTGTCGTATGCCTCTTCTGAATAGTCTCGATT
TAAATTTCGATTACGGTGATAATGCCAAAGAATCAAAATGGAAAATGGAA
TGAATGGAGAGGTAAATTCGTGATAGGGAGTCGCCAGTCCTGATATAAAA
GAACCACGCCAAACTTTGAAAAGATGTTACAGCTAGTTTCGAACCATAAC
AACCAATGTGGACTCTAAGTC
FMO11816.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10887-RA | 2188 | CG10887-RA | 102..1253 | 9..1154 | 5260 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20115131..20116161 | 87..1117 | 4655 | 98.5 | Plus |
| 3R | 32079331 | 3R | 20115035..20115077 | 47..89 | 215 | 100 | Plus |
| 3R | 32079331 | 3R | 20114939..20114978 | 9..48 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:16:25 has no hits.
FMO11816.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:09 Download gff for
FMO11816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10887-RA | 1..1059 | 9..1067 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:36 Download gff for
FMO11816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10887-RA | 102..1160 | 9..1067 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:03 Download gff for
FMO11816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10887-RA | 102..1160 | 9..1067 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:03 Download gff for
FMO11816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20114939..20114978 | 9..48 | 100 | -> | Plus |
| 3R | 20115037..20115076 | 49..88 | 100 | -> | Plus |
| 3R | 20115133..20116111 | 89..1067 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:36 Download gff for
FMO11816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15940661..15940700 | 9..48 | 100 | -> | Plus |
| arm_3R | 15940759..15940798 | 49..88 | 100 | -> | Plus |
| arm_3R | 15940855..15941833 | 89..1067 | 99 | == | Plus |
