Clone FMO11825 Report

Search the DGRC for FMO11825

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:118
Well:25
Vector:pMK33-CFH-BD
Associated Gene/TranscriptU26-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11825.5prime Sequence

1165 bp (1050 high quality bases) assembled on 2012-06-25

> FMO11825.5prime
CAGTCGACATGATTCCATCAGATATGGACCTAATTGAATCAACCGCGGAG
CAGCCGGACAAACTCTACAACATCAACAGAATCCGAGCGTTTAAAGATGT
TCCCTTCCTGATAAGGCGCACGGAGTCCAAGGACACGATCGTGTCATACG
CCGATGCTGCAGATGAGATTCAAGTTTTGATGAATTTTCTGCGAAAGAAC
GGGGTCCCAGATGAGGCAGGAATTGCTCTACGAGTCACGGAGCACACGCC
GGCCTCTTCTCTTATGATTTTGGCGATCCTCAACAACAAGTGCCACTTTT
TTCCCACGGATAAGATGATGCTGTCACAGGATCTATACTCACAGATGAGC
ACGGCCGGAGTGGACTACCTCGTGGCCAACAAACATTTAACCGTTGCACC
CTTGTACTTCACATTTCTGGGGAGCATCTTGGTGTTTAAGGAGGACTGTA
GGCTATACAGGGTAAAGTTGAAATCCGCTGATGAGACTGTACAATCCAAA
AAGCCGTTACCAGCCAATATGTGCTACACAATCTCCACGACGGGCACTAC
GGGTAAGCCAAAGCTCATACATGTGCCCTATGAATGCATAGCGCCCAACA
TAGTGGGGCTCAGCCAAAAGTTAAACGTCTCCATGGCCGACATCATTTAC
CTTGGCACACCAATTACCTTCGATCCCTTCGTGGTGGAGTTCTTCCTAGC
TCTTCAAAATGGTGCTACTTTACTGACCAGTCGTCACTCCATGAGGGACT
CGCCAAGCAAGGTGCTAAGTGCCCTCTTCCCCGACAACCTGTCCACACCG
GGAATCACTGTTCTGCAGATGACTCCTTCGCTGTTTCGGCAATTTGGTGC
ATCTTCCATCAAAGATCGAGTGCTCAGCGGGTCCAGTTCATTGAGAGTAC
TGCTCCTTGGTGGCGAACCATTTCCCAGCATGTCGAGCTTGTTACTTGGA
TGCATCCAAGTGTCCTGATGCAAGAAGCACAAAATGCACATATATGGAAT
CACGGAAAATATCCTGTTGGAGCTACTGCACATCGGTTCAGTCATTACAA
TCTCCTGGTGCCTTGGGCACGCCTATCGAAAAGGACCGGGTCTGGCGGAA
TTGAATTCCGAAGACATTGAAACCCTCAAGACAAGGAGAAGCTGTTTCCG
GTAAGGTTCCAGGCG

FMO11825.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
U26-RC 3353 CG13401-RC 153..1287 9..1148 5230 98.1 Plus
U26-RA 3422 CG13401-RA 153..1287 9..1148 5230 98.1 Plus
U26-RD 3433 CG13401-RD 153..1298 9..1148 5110 97.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8448759..8449097 613..275 1695 100 Minus
2L 23513712 2L 8448425..8448708 895..612 1405 99.6 Minus
2L 23513712 2L 8449158..8449424 275..9 1335 100 Minus
2L 23513712 2L 8448164..8448355 1086..894 575 92.3 Minus
Blast to na_te.dros performed on 2014-11-28 03:16:44 has no hits.

FMO11825.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:12 Download gff for FMO11825.5prime
Subject Subject Range Query Range Percent Splice Strand
U26-RA 142..1285 3..1151 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:46 Download gff for FMO11825.5prime
Subject Subject Range Query Range Percent Splice Strand
U26-RA 147..1290 3..1151 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:11 Download gff for FMO11825.5prime
Subject Subject Range Query Range Percent Splice Strand
U26-RA 147..1290 3..1151 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:11 Download gff for FMO11825.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8449159..8449430 3..274 98   Minus
2L 8448425..8448706 614..895 99 <- Minus
2L 8448759..8449097 275..613 100 <- Minus
2L 8448123..8448353 896..1132 91 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:46 Download gff for FMO11825.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8448123..8448353 896..1132 91 <- Minus
arm_2L 8448425..8448706 614..895 99 <- Minus
arm_2L 8448759..8449097 275..613 100 <- Minus
arm_2L 8449159..8449430 3..274 98   Minus