FMO11827.5prime Sequence
994 bp (900 high quality bases) assembled on 2012-06-25
> FMO11827.5prime
TCGCAATCGGTAACGGAAATGGCCCCAGTGGCCACAACAGTGGCAATGGT
CATGTCCTAGTCAGCGGACTTCACTCGAGCGACTCCTCCAGCGGAATTGG
CAGTGCGAGCAGTGAGAAGTTGGCAACGCGCAGCGACGAGACCCATGCCC
AAAGGCGGAGCAGTGGCGAAGGGGATGCTGACGAGGATGCGGATGATGAC
GATGACGATGAGGATGAAGATGAGGATGATGGGGATGAAACTACGGCGGA
GTCCCCTTTGCTGCCCCTGAAGGAAGACGAGCCATCGCCCCCTCAAGTCC
ACAGTTCCTCGCACATATCAGCCAGTAGGTCACCCCACTTCGGCACCTCA
GCTGGTGACCTCGAGCCAAAGCACCTCCCATTAGCACCGAACTCCCCGTC
CAACGAGCAGGCCAAGTGCGAGGGTCCGGAAGGAGAGGCCAACAACAACA
ACAGCACCAGCAGCAACCACAATCACAATCCCAACCACATTCGCACCCAT
AGGCGCCAGCACGAGTATCAGCTCTATCCCAACGACACCTTCGCTCAACT
GGAGGGAAAGGCCCCCAAGCCGAACACCAAGATGCAGACCAAAGTGGATG
CGGTGGGCCAGATCACGGGTCCGTGGGGAAAGTGGCAGCTGCGAACGGTG
CTACTGATCTTCCTGTGCAAGATTCCATCGTCCTGTTTATGGCCTGCATC
ATTTTTCACGGCCCCAGCACCCAGGCACGGCGAGTTCTTCTGCAAGCCCC
CCCACACATCGGAGCCCAGAACCAAACGCAATGGATCATGGTCTCGCATC
CGCAGAAGGAGGAGAGCGACGATCAGAGTTTAGCATTTGACTTCTGCAAT
GTCTACCAGGATGCCCAGGAGCACGCCCATCACTATTACAACTACGAGAA
CAGTGACCAGAGCCGCGCGTGTAGGAGAAACCTCTGCAACTGCCACTCCC
AACGTATTTCCTTGCACCGGAGTTCCAGCATCGAATCCCGACTA
FMO11827.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44098-RC | 3925 | CG44098-RC | 308..1296 | 3..994 | 4600 | 98.2 | Plus |
| CG44098-RE | 4187 | CG44098-RE | 570..1558 | 3..994 | 4600 | 98.2 | Plus |
| CG44098-RD | 3830 | CG44098-RD | 455..1201 | 245..994 | 3390 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4757678..4758412 | 980..245 | 3160 | 98 | Minus |
| 3R | 32079331 | 3R | 4767978..4768221 | 246..3 | 1220 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:16:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2487 | 440..542 | 147 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1512..1614 | 434..535 | 143 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6824 | 440..522 | 142 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2477 | 440..583 | 142 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6914 | 364..522 | 139 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6812 | 439..522 | 134 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2397 | 440..522 | 132 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6881 | 440..542 | 132 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6863 | 440..539 | 130 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1537..1577 | 438..478 | 124 | 78 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2947..3008 | 441..499 | 123 | 69.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1160 | 441..539 | 123 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1560..1626 | 440..499 | 121 | 70.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2418..2520 | 440..539 | 119 | 62.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1115..1153 | 440..478 | 114 | 76.9 | Plus |
FMO11827.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:13 Download gff for
FMO11827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31530-RA | 151..898 | 242..993 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:49 Download gff for
FMO11827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44098-RC | 307..1295 | 1..993 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:13 Download gff for
FMO11827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44098-RE | 569..1557 | 1..993 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:13 Download gff for
FMO11827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4757667..4758411 | 246..993 | 97 | <- | Minus |
| 3R | 4767979..4768222 | 1..245 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:49 Download gff for
FMO11827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 583389..584133 | 246..993 | 97 | <- | Minus |
| arm_3R | 593701..593944 | 1..245 | 99 | | Minus |
