FMO11828.5prime Sequence
1109 bp (968 high quality bases) assembled on 2012-06-25
> FMO11828.5prime
TTCTGCCTGCGCTGGAACAACTACCAGAGCAGCATAACCTCGGCGTTCGA
GAATCTGCGCGACGACGAGGCCTTCGTGGATGTGACCCTCGCCTGCGAGG
GACGCAGCATCAAGGCACACCGCGTCGTCCTCTCCGCCTGCAGTCCCTAC
TTCCGCGAGCTGCTCAAGAGCACACCCTGCAAACACCCGGTCATACTGCT
GCAGGATGTCAACTTCATGGACCTGCACGCCCTGGTGGAGTTCATCTACC
ACGGCGAGGTCAACGTGCACCAGAAGTCCCTGCAGTCCTTCCTTAAGACC
GCCGAAGTGCTGCGCGTCTCTGGACTCACGCAGCAGCAGGCAGAGGTCAC
ACACAGCCATCTGGCTCAGATACAGAACCTGGCCAATTCCGGCGGCCGCA
CGCCGCTCAACACGCACACCCAATCGCTCCCACATCCGCACCATGGCTCG
CTACACGACGACGGCGGCTCCTCGACCCTCTTCAGCCGCCAGGGAGCGGG
TTCGCCACCGCCGACGGCGGTGCCATCGCTGCCCTCGCACATCAACAACC
AGCTGCTGAAGCGCATGGCCATGATGCACCGCAGCAGTGCCGCCGCCGCC
GCCGAGGAGACCTCCCACGCCTTTAAAGCGTCTGCGCGGCTCGGACAACA
GCCTGCCGCTGTCCGGCGCCGTTGGCAGTGGCAGCAACAACAACAGCCCC
GACTTGCCGCCGCTTCATGCGCGCAGCGCCTCGCCCCAGCAGACTCCGGC
CGACTTCAGTACGATCAAGCACCACAACAACAACAACACGCCGCCGCTGA
TGAGGAGAAGCGCATCGGACCCACAGGCAACGGAAACTCTGGCAACGGCA
ATGGCAATGGCAACGGAGCGAGCACCGGCAACGGAATCTCCATCAGCGAC
AGCTGGGCAGCCTCACACCTTCGCCGCTGGCTCGAGCGGGCGCCGATGAT
GTTCAAGTCGGAGCCATGGAACATGTTCTGCTCTAACTACAATTGCCATG
CCATCTACGAAACTAGCACGATCTCCACCGGGCGAGCCCGATGCCCATCG
TTCAGTAGCGGCGACGGCGCAAGGGAATCCTTGACTCTCGGCCACGACGA
GGAGTATCG
FMO11828.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| br-RO | 4368 | CG11491-RO | 998..2101 | 1..1104 | 4920 | 97.2 | Plus |
| br-RN | 4546 | CG11491-RN | 993..2096 | 1..1104 | 4920 | 97.2 | Plus |
| br-RM | 4213 | CG11491-RM | 660..1763 | 1..1104 | 4920 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1636096..1636537 | 358..800 | 2165 | 99.8 | Plus |
| X | 23542271 | X | 1635830..1636020 | 167..357 | 940 | 99.5 | Plus |
| X | 23542271 | X | 1624540..1624707 | 1..168 | 840 | 100 | Plus |
| X | 23542271 | X | 1636639..1636896 | 812..1069 | 755 | 89.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:16:53 has no hits.
FMO11828.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:14 Download gff for
FMO11828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| br-RB | 866..1957 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:51 Download gff for
FMO11828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| br-RM | 660..1751 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:16 Download gff for
FMO11828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| br-RM | 660..1751 | 1..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:16 Download gff for
FMO11828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1624540..1624707 | 1..168 | 100 | -> | Plus |
| X | 1635832..1636020 | 169..357 | 99 | -> | Plus |
| X | 1636096..1636549 | 358..811 | 99 | -> | Plus |
| X | 1636639..1636911 | 812..1084 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:51 Download gff for
FMO11828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1529865..1530053 | 169..357 | 99 | -> | Plus |
| arm_X | 1518573..1518740 | 1..168 | 100 | -> | Plus |
| arm_X | 1530129..1530582 | 358..811 | 99 | -> | Plus |
| arm_X | 1530672..1530944 | 812..1084 | 91 | | Plus |
