FMO11829.5prime Sequence
1137 bp (1012 high quality bases) assembled on 2012-06-25
> FMO11829.5prime
CAGTCGACATGAACAAATACTCGGCATTTATAGTCTGCATTTCGCTCGTG
CTTTTATTTACAAAAAAGGATGTGGGGAGCCATAATGTGGACTCAAGAAT
ATATGGTTTCCAGCAATCATCAGGTATTTGCCATATTTACAATGGCACCA
TTTGTCGCGATGTCTTGAGCAATGCCCATGTTTTCGTATCCCCCAATCTC
ACCATGAACGATTTGGAGGAGCGATTAAAGGCAGCTTATGGAGTAATCAA
GGAATCCAAGGATATGAACGCAAATTGCCGCATGTACGCTTTGCCCAGCT
TGTGTTTCAGTTCAATGCCAATTTGCCGGACTCCAGAGCGCACGAATCTC
TTGTACTTCGCCAACGTGGCCACAAATGCCAAGCAACTGAAGAACGTCAG
CATTCGACGGAAGAGAACCAAGTCCAAGGACATTAAGAACATAAGCATAT
TCAAGAAGAAGTCCACCATCTACGAGGATGTGTTCAGCACAGACATATCG
AGTAAATACCCACCAACCAGAGAGTCTGAGAACCTAAAACGCATTTGCCG
CGAAGAGTGCGAACTTCTGGAGAACGAGCTGTGCCAGAAGGAATATGCCA
TTGCCAAGCGACATCCCGTCATCGGGATGGTGGGTGTGGAGGATTGCCAA
AAGTTGCCGCAGCACAAGGACTGCCTATCCTTGGGCATCACCATCGAGGT
GGATAAGACGGAGAATTGTTACTGGGAGGATGGATCGACATATAGAGGAG
TGGCCAACGTCTCCGCATCCGGAAAGCCATGTTTGCGATGGTCATGGCTG
ATGAAGGAAATCTCCGATTTCCCTGACTCATCGGTCAGAATTATTGCAGA
AATCCTGAAGCGTTGAAATAGTCCTTGGTTGTTTTGTGACTCCTCACGTG
AACGCATAATCGAACTTTGTGATATTCCAAATGTGCGGACAAATATGGAT
TGCCATTGTCGACGACTGCAGCCATTATTCTATATTCATAATTATATTTG
CGATATACTTTTCAAGGAGACAATCATGCCTATGATTGAGATATTCATTA
TATCAACCACCAGCGCGATAAATTTCTTACGAAATCCAGCTTATACGCCA
GATTGCTGGCAGAATCTGGAATCATCCGATTCGTGCT
FMO11829.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ror-RA | 2271 | CG4926-RA | 125..1207 | 9..1072 | 4895 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10252484..10253074 | 260..849 | 2905 | 99.8 | Plus |
| 2L | 23513712 | 2L | 10252274..10252428 | 106..260 | 775 | 100 | Plus |
| 2L | 23513712 | 2L | 10251967..10252064 | 9..106 | 490 | 100 | Plus |
| 2L | 23513712 | 2L | 10253157..10253312 | 866..1015 | 440 | 92.9 | Plus |
Blast to na_te.dros performed 2014-11-28 03:16:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy | 7469 | gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). | 2267..2355 | 1021..933 | 121 | 59.6 | Minus |
FMO11829.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:14 Download gff for
FMO11829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ror-RA | 123..1175 | 1..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:52 Download gff for
FMO11829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ror-RA | 118..1170 | 1..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:17 Download gff for
FMO11829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ror-RA | 118..1170 | 1..1040 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:17 Download gff for
FMO11829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10251960..10252064 | 1..106 | 96 | -> | Plus |
| 2L | 10252275..10252427 | 107..259 | 100 | -> | Plus |
| 2L | 10252484..10253074 | 260..849 | 99 | -> | Plus |
| 2L | 10253139..10253304 | 850..1007 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:52 Download gff for
FMO11829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10251960..10252064 | 1..106 | 96 | -> | Plus |
| arm_2L | 10252275..10252427 | 107..259 | 100 | -> | Plus |
| arm_2L | 10252484..10253074 | 260..849 | 99 | -> | Plus |
| arm_2L | 10253139..10253304 | 850..1007 | 94 | -> | Plus |
