FMO11830.5prime Sequence
824 bp (789 high quality bases) assembled on 2012-06-25
> FMO11830.5prime
AGCAAAGCGAGGGCGACGCCGCCACCACCCACTTAACAACAACAGCAACA
GCAACAACAGGAGCAATAGTAGCAGCAGGAGTTACTACTACGCTGCCAGC
TACAAAAACAACAACCACAGCGGCAGACACGAGCACGACGAATGCCGCCA
AAAAGATTCGCCGCACCTTCTCCATGCCACGCAATCCCTTCCGCTGGACG
CGTAAGTTCAAAACGGCAGTGGCCGTTACGTCGTCCGCGGGAGCGGAAAA
CGATAACGAAAGCGGCAAGAATAACGGGGCCAGGGAGCGGCGTGGCAGCC
ACACGGCGATCTCGTCCTGCGTGGGAGGTGGGCGTGGCAGGAGCGGGAGC
ATTGTGTCGCTCAGCAGCTACGAGGCCCCATTCATTTCGTCCACCAACAA
CAACACAACCACCGCCAGCAATGGAAACAACAACAACAGTAGCAGTAGCA
ACATCAACAGCAAGCGGACACGTGCTCTGCGCCGTTCGTCCTTCAGGAAG
TTTCTCAACCGGATCGCCCAGCACCTGAGCTCAACGGTTAATGTCGTGTC
GGAGGAGAAGCACTCGCCTGCGAATCGCATCGCCTTCATTGAAATTGTGC
CATTCTACTCCGGATGCTGGCGCAGAAAAAGAGGCGAACAAACATGGTCA
GCCATCGGTTTCGGGCTCTTCGTCGGGCGGCGGAGGAGGAGCAGGAGGAC
CAGCGGCGGGGAGAGAGTGCCCCCCATCGGAGGCTATCAGTGGCCGGCGG
ATCAGACTCCAGGTGTAATGGGATTGAAGAACCACGGGAATACTTGCTTA
TGAACGCGTGCTTGAATGCTTCAA
FMO11830.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30421-RA | 5225 | CG30421-RA | 544..1368 | 1..823 | 3955 | 98.9 | Plus |
| CG30421-RC | 4550 | CG30421-RC | 544..1091 | 1..548 | 2740 | 100 | Plus |
| CG30421-RB | 5141 | CG30421-RB | 544..1091 | 1..548 | 2740 | 100 | Plus |
| CG30421-RC | 4550 | CG30421-RC | 1091..1284 | 633..823 | 835 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24744292..24744839 | 1..548 | 2740 | 100 | Plus |
| 2R | 25286936 | 2R | 24752669..24752837 | 632..799 | 780 | 98.8 | Plus |
| 2R | 25286936 | 2R | 24751299..24751380 | 548..629 | 395 | 98.8 | Plus |
Blast to na_te.dros performed 2014-11-28 03:17:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2362..2812 | 6..462 | 236 | 54.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2320..2463 | 35..167 | 228 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6864 | 22..174 | 213 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6890 | 23..167 | 210 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6879 | 6..125 | 208 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6812..6939 | 23..150 | 208 | 64.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1042..1163 | 4..124 | 202 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6865 | 1..126 | 195 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..6909 | 35..135 | 195 | 68.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1157 | 34..139 | 192 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2428 | 35..125 | 185 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2788..2932 | 6..153 | 184 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6842 | 37..167 | 176 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1502..1605 | 14..114 | 170 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2989 | 38..438 | 144 | 53.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2584..2659 | 3..77 | 143 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6860..6915 | 20..77 | 141 | 74.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1104..1179 | 35..114 | 140 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1546..1587 | 35..76 | 138 | 81 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2908 | 6..155 | 137 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2449..2549 | 35..135 | 136 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2765..2891 | 22..141 | 133 | 59.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3292..3379 | 35..114 | 133 | 67 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5640..5692 | 26..79 | 132 | 74.1 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 7095..7147 | 26..79 | 132 | 74.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 9932..10005 | 36..108 | 124 | 64.9 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7942..7998 | 21..80 | 113 | 68.3 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9386..9442 | 21..80 | 113 | 68.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1122..1163 | 35..76 | 111 | 73.8 | Plus |
| TART-A | 13424 | TART-A 13424bp | 10170..10222 | 84..135 | 109 | 69.8 | Plus |
FMO11830.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:15 Download gff for
FMO11830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30421-RA | 481..1304 | 1..822 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:54 Download gff for
FMO11830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30421-RA | 544..1367 | 1..822 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:19 Download gff for
FMO11830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30421-RA | 544..1367 | 1..822 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:19 Download gff for
FMO11830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24744292..24744839 | 1..548 | 100 | -> | Plus |
| 2R | 24751300..24751383 | 549..633 | 97 | -> | Plus |
| 2R | 24752671..24752862 | 634..822 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:54 Download gff for
FMO11830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20631815..20632362 | 1..548 | 100 | -> | Plus |
| arm_2R | 20638823..20638906 | 549..633 | 97 | -> | Plus |
| arm_2R | 20640194..20640385 | 634..822 | 96 | | Plus |
