FMO11831.5prime Sequence
1082 bp (978 high quality bases) assembled on 2012-06-25
> FMO11831.5prime
CAGTCGACATGGATAAAGTGCACACGAGACATGGCAACATCGAGACCCTT
CCCCGATTCGTTCGCAACTTGCGAAACCTCCGCTGTTGCGATGGGGATGC
GATATCGCTGGAATGTCACGTTGAGGCCGATCCGGAGCCGTTCATCATCT
GGGAAAAGGATGGGCATGTTATGCCCAGCGATCGGGACTACGTGATGTCT
TTCGATGGAACCAAGGCAACGCTGAGCATACCGCGCGTATATCCAGAGGA
TGAGGGCGAGTACACGTGCGTGGCCAAGAACTCGGTGGGTCGCAGTCTCT
CTTCCGCCTGCATTATAGTGGATGTGCCCGAGGAGAAGGAGAATATGCTC
AGCCGCCAGCTAGCGCGTCCCATTGGCCTGCTCTCCGCCCACTCCACGCC
CCGTTCTACGCCGAGATCCACGCCCGCCAGAAGTTTCTCTCCCCTGCGCC
TATCGTACCGCACCAGCAGCATCGATCTGTCCGGCGTGGCGGAACGCAGG
CGTAGTGATGCCCGGAATGCCATCACGGCGCCAAAGTTTCTCGCCATTCC
CTACAATCGCGTCGTCGAGGAGGGCGACAGTGTGCGCTTCCAGTGCGCCA
TCTCCGGACATCCCACACCGTGGGCGACATGGGACAAGGATGGCCTGATT
GTGACACCCACGCCGCGCATTGCCGTCAAGGAAATCGATGACCTTCGCAT
CATAGAGATCGATGAGGTGACCTTCGACGATGCTGGCCTGTATCGCGTCA
CGCTGGAGAACGATTTCGGTCGTATTGAGGCCACCCGCTCGCTTGGACGT
CATCCGCAGCTCCCGCTACTCCAAGTCGCCTTCGGTGCGCAGCGTGCGTG
CCTCCTCCTCCCGCCGTAATGCCCACTTGTACAGGCGCATCATGGGTCCA
TCCACAGCAATTGCGGACGCTTGGCTCTGGGCAGTGCTAATCGGGTTCGT
CGTGCCCTCGGTGAGATTCTATCACAACGACGTGTAGCTCGAGGCCCTCG
AAACGAGTCCATTCCCTGCTGCAGACTCTCGATTGTCCTGCCCCTTAGTG
GAACAATGTGATACCCGCTGAGGATTTGAGGG
FMO11831.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Strn-Mlck-RV | 24960 | CG44162-RV | 20866..21917 | 8..1061 | 4785 | 97.4 | Plus |
| Strn-Mlck-RU | 25666 | CG44162-RU | 20866..21917 | 8..1061 | 4785 | 97.4 | Plus |
| Strn-Mlck-RT | 24592 | CG44162-RT | 20498..21549 | 8..1061 | 4785 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15953902..15954774 | 907..34 | 4290 | 99.7 | Minus |
| 2R | 25286936 | 2R | 15953719..15953847 | 1024..898 | 255 | 86.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:17:07 has no hits.
FMO11831.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:16 Download gff for
FMO11831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Strn-Mlck-RK | 23331..24346 | 1..1015 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:56 Download gff for
FMO11831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Strn-Mlck-RT | 20492..21507 | 1..1015 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:20 Download gff for
FMO11831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Strn-Mlck-RT | 20492..21507 | 1..1015 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:20 Download gff for
FMO11831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15953902..15954773 | 35..907 | 99 | <- | Minus |
| 2R | 15954833..15954864 | 1..34 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:56 Download gff for
FMO11831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11841407..11842278 | 35..907 | 99 | <- | Minus |
| arm_2R | 11842338..11842369 | 1..34 | 91 | | Minus |
