Clone FMO11836 Report

Search the DGRC for FMO11836

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:118
Well:36
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9990-RF
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11836.5prime Sequence

462 bp (462 high quality bases) assembled on 2012-06-25

> FMO11836.5prime
CAGTCGACATGCTGATATCAACTATTTCCACAGACTCCGCGATGGCGGCC
ACAAACAACGATGGTGGCACGCAGCCGAATGCCGTGGCGGCATGGGGTGC
TCCGGCCAATGGACCCCGGAACACACAGGCCGCCGTATCCGTGCGGCATG
CCTTCAAGGCGTACGGAAAGAAGAAGAACGCCAACCAGGTGCTGAACAAC
CTGAACATGACCGTGCCCAAGGGAACAATCTATGGTCTTCTGGGAGCCTC
CGGATGTGGCAAGACCACCCTGCTCTCCTGCATCGTTGGACGTCGTTACA
TGGACGCCGGTGAGATCTTTGTGCTGGGCGGCAAGCCCGGCACTAGGGGA
TCAGGTGTTCCCGGAAAGCGTGTGGGCTACATGCCCCAGGAGATCGCACT
GTACGGAGAGTTCTCCATCCAGGAGACCATGATGTACTTCGGCTGGATCT
TCGGCATGGATA

FMO11836.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9990-RF 3555 CG9990-RF 447..900 9..462 2270 100 Plus
CG9990-RD 3760 CG9990-RD 688..1141 9..462 2270 100 Plus
CG9990-RB 3802 CG9990-RB 688..1141 9..462 2270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28692244..28692476 230..462 1165 100 Plus
3R 32079331 3R 28690211..28690417 23..229 1035 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:16:40 has no hits.

FMO11836.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:12 Download gff for FMO11836.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9990-RB 688..1140 9..461 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:44 Download gff for FMO11836.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9990-RB 688..1140 9..461 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:09 Download gff for FMO11836.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9990-RB 688..1140 9..461 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:09 Download gff for FMO11836.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 28692244..28692475 230..461 100   Plus
3R 28690211..28690417 23..229 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:44 Download gff for FMO11836.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24515933..24516139 23..229 100 -> Plus
arm_3R 24517966..24518197 230..461 100   Plus